New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	211704 =	12 (0.550)	5 (0.250)	3/242	NT	28.4%	intergenic (+262/+66)	USA300HOU_0193/USA300HOU_0194	possible holo‑[acyl‑carrier‑protein] synthase/hypothetical membrane protein
	?	CP000730	211755 =	14 (0.690)					intergenic (+313/+15)	USA300HOU_0193/USA300HOU_0194	possible holo‑[acyl‑carrier‑protein] synthase/hypothetical membrane protein

CGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCAT‑CAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAAT  >  CP000730/211567‑211812                                                                                                                                          |                                                                                                              tacctgctgtgtgggatcaaccattccaagagcatctgtcagaattctttggccatatcgtctggatgatgacaattgaattagtgcgacaacattttgtctatcgctataaattaaattaatacactgactaacatTAAc                                                                                                            >  1:148596‑M1/138‑141 (MQ=255) tacctgctgtgtgggatcaaccattccaagagcatctgtcagaattctttggccatatcgtctggatgatgacaattgaattagtgcgacaacattttgtctatcgctataaattaaattaatacactgactaacatTAAc                                                                                                            >  1:25218‑M1/138‑141 (MQ=255)      gctgtgtgggatcaaccattccaagagcatctgtcagaattctttggccatatcgtctggatgatgacaattgaattagtgcgacaacattttgtctatcgctataaattaaattaatacactgactaacatTAACGTGAg                                                                                                       >  1:203875‑M1/133‑141 (MQ=255)       tAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGc                                                                                                      >  2:33971/1‑141 (MQ=255)                    aaGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCAT‑CAATCATCATa                                                                                        <  1:142342/141‑1 (MQ=255)                         aaaaaTATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCAT‑CAATCATCATACTCaa                                                                                   >  2:222102/1‑141 (MQ=255)                             atatACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCAT‑CAATCATCATACTCAAACga                                                                               >  1:25648/1‑141 (MQ=255)                              tataCTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCAT‑CAATCATCATACTCAAACgat                                                                              <  1:88933/141‑1 (MQ=255)                                taCTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCAT‑CAATCATCATACTCAAACgatga                                                                            >  1:52684/1‑141 (MQ=255)                                   tctgtcagaattctttggccatatcgtctggatgatgacaattgaattagtgcgacaacattttgtctatcgctataaattaaattaatacactgactaacatTAACGTGAGCAT‑CAATCATCATACTCAAACGATGAttt                                                                         >  2:149811‑M1/104‑141 (MQ=255)                                   tctgtcagaattctttggccatatcgtctggatgatgacaattgaattagtgcgacaacattttgtctatcgctataaattaaattaatacactgactaacatTAACGTGAGCAT‑CAATCATCATACTCAAACGATGAttt                                                                         >  2:153847‑M1/104‑141 (MQ=255)                                   tctgtcagaattctttggccatatcgtctggatgatgacaatggaattagtgcgacaacattttgtctatcgctataaattaaattaatacactgactaacatTAACGTGAGCAT‑CAATCATCATACTCAAACGATGAttt                                                                         >  1:209360‑M1/104‑141 (MQ=255)                                         agaattctttggccatatcgtctggatgatgacaattgaattagtgcgacaacattttgtctatcgctataaattaaattaatacactgactaacatTAACGTGAGTTTTAAATCATCATACTCAAACGATGATTTAAAAc                                                                    >  2:61954‑M1/98‑141 (MQ=255)                                             tGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCAT‑CAATCATCATACTCAAACGATGATTTAAAACTCACg                                                               >  1:73545/1‑141 (MQ=255)                                                   tACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCAT‑CAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATg                                                         >  1:195347/1‑141 (MQ=255)                                                              ataGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCAT‑CAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAgtgt                                              >  2:182707/1‑141 (MQ=255)                                                                                    agaCTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCAT‑CAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATa                        >  2:62775/1‑141 (MQ=255)                                                                                       cTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCAT‑CAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGAc                     <  2:73545/141‑1 (MQ=255)                                                                                                       atcactataaattaaattaatacactgactaacagTAACGTGAGCAT‑CAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACt     >  1:127848‑M1/36‑141 (MQ=255)                                                                                                          tGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCAT‑CAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAAt  <  2:46634/141‑1 (MQ=255)                                                                                                                                          |                                                                                                              CGAGATTAAAGTAAGTGATAAGGTAAAAATATACTGAGCAATATTGAAATTACCGAAAATAATAGTTTGTTACGACGCATTTGAGACTTTAATGCTCACGTAAGTTGGCTGGAATCATATCATGTCAGTTAATAAAATAACGTGAGCAT‑CAATCATCATACTCAAACGATGATTTAAAACTCACGTTAATGTTAGTCAGTGTATTAATTTAATTTATAGCGATAGACAAAATGTTGTCGCACTAAT  >  CP000730/211567‑211812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.