New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1822717 =	62 (0.910)	3 (0.050)	3/238	NT	5.5%	intergenic (+38/+208)	USA300HOU_1697/ackA	possible universal stress protein/acetate kinase
	?	CP000730	1822745 =	47 (0.750)					intergenic (+66/+180)	USA300HOU_1697/ackA	possible universal stress protein/acetate kinase

CATGCGCCATGTGACGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTT  >  CP000730/1822578‑1822851                                                                                                                                            |                                                                                                                                        cATGCGCCATGTGACGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAAAATCAAAATTAAATATAGATGATAATTAGATCACTACTTGATCATTATGaa                                                                                                                                        >  2:697299/1‑141 (MQ=255) atgtagggggtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaaa                                                                                                                                        >  2:694754‑M1/140‑141 (MQ=255)   tGCGCCATGTGACGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCTTTGTGAGcc                                                                                                                                      >  1:253517/1‑141 (MQ=255)     aggaggtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaAACCaa                                                                                                                                    >  2:472480‑M1/136‑141 (MQ=255)        cATGTGACGTGTTAGTTGTTCGTACTCAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTg                                                                                                                                 <  1:469884/141‑1 (MQ=255)        aggtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaAACCAAGTg                                                                                                                                 >  1:233373‑M1/133‑141 (MQ=255)         ggtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttagaaacaataaaaAACCAAGTGc                                                                                                                                >  1:402537‑M1/132‑141 (MQ=255)         aTGTGATGGGTTAGTTGTTAGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAACTATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGc                                                                                                                                >  2:121946/1‑141 (MQ=255)                gtgtTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTc                                                                                                                        <  2:673696/141‑1 (MQ=255)                  gtTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTg                                                                                                                      <  2:112224/141‑1 (MQ=255)                    tAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCa                                                                                                                    >  2:44162/1‑141 (MQ=255)                    tAGTTGGTCGTACTGAAGAGGTACCAGCCGACTTCCAACCACCAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCa                                                                                                                    <  1:342585/141‑1 (MQ=255)                      gttgttCGTACGGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACt                                                                                                                  <  1:169849/141‑1 (MQ=255)                       ttgttCGTACTGAAGAGTTGCCGGCAGACTTCCAACCACTAGTTGCAACAACTCAGTTAGGTGAAAAATATCAGAATTATATATAGATGATCACTAGATAACTACTTGATCATTATGTACCGAGTGCA‑ACTTTCTGCAAtt                                                                                                                 >  1:655227/1‑141 (MQ=255)                          ttCGGACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAAAAGAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGt                                                                                                              <  1:107149/141‑1 (MQ=255)                            cGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGttt                                                                                                            <  2:651159/141‑1 (MQ=255)                            cGTACCGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGttt                                                                                                            <  1:220743/141‑1 (MQ=255)                             gTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGTTCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGtttt                                                                                                           <  1:381706/141‑1 (MQ=255)                               aCTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGtttttt                                                                                                         >  2:543126/1‑141 (MQ=255)                               aCTGAAGAGTTACCAGCAGAATTATATCCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGtttttt                                                                                                         >  1:374748/1‑141 (MQ=255)                                cTGAAGACGTAACAGCAGACTTCCAACCAGAAGTTGCAAAAACTCAATTACTTGAAAAATATCAAAATTAAATATAGATGATCATTATATAACTACTTGATCATTATGAACCAAGTGCA‑ACGTTCTGCACTTGGTTTTTTa                                                                                                        <  2:167992/141‑1 (MQ=255)                                  gAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTAtt                                                                                                      >  2:425537/1‑141 (MQ=255)                                    agagTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGt                                                                                                    <  2:712437/141‑1 (MQ=255)                                       gTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCCATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTta                                                                                                 <  1:775237/141‑1 (MQ=255)                                          acaagcagACTTCCAACCACAAGTTGCAACAACTCAATTAGGTGAAAAATATCAAAATTCAATTTAGATGATCATTAGATAACTACTTGGTCATTGTAAACCAAGTGAA‑ACTTTGTGAACTTGGTTTTTTCTTGttattaa                                                                                              >  2:221243/4‑136 (MQ=255)                                                 gACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAAc                                                                                       <  1:404620/141‑1 (MQ=255)                                                 gACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAAc                                                                                       >  2:568942/1‑141 (MQ=255)                                                   cTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTc                                                                                     >  1:432489/1‑141 (MQ=255)                                                     tCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCAc                                                                                   <  1:156240/141‑1 (MQ=255)                                                       cAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAATATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACtt                                                                                 <  2:243886/141‑1 (MQ=255)                                                        aaCCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTta                                                                                <  1:610606/141‑1 (MQ=255)                                                            acaAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGTTCAATTGGTAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTtaataa                                                                            <  1:367401/141‑1 (MQ=255)                                                             caAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATCACTACTTGATCATTATGAACCAAGTGCA‑ACATTCTGCACTTGGTCTTTAATTGTTTTTAAATAAAACTCACTTaataat                                                                           >  2:537874/1‑141 (MQ=255)                                                             caAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTaataat                                                                           >  2:185210/1‑141 (MQ=255)                                                                gTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGtt                                                                        >  1:408321/1‑141 (MQ=255)                                                                gTTGCAACAACTCAATTACGTGAAAAAAGTCCAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTATTAATGtt                                                                        >  2:749010/1‑141 (MQ=255)                                                                 ttGCAACAACTCAATTACGTGCAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATACTTATGAACCAAGTGCA‑ACTTTGTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGttt                                                                       >  2:369166/1‑141 (MQ=255)                                                                    caacaaCTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTCTTGTTTATAAATCAAACTCACTTAATAATGTTTTct                                                                    >  1:521236/1‑140 (MQ=255)                                                                        aaagaattaagtagtcgaagaagattatgaaaacattattaagtgagttttatttataaacaataaaaAACCAAGTGCA‑GAAAGTTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAAt                                                                <  1:736922‑M1/73‑1 (MQ=255)                                                                             aattagcttaaaaaTATCATAATTAAATACAGATGTTCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCGTCACTTGGTTTTTTATTGGTTATAAATAGAACTCACTTACTAATGTTTTCATAAtcttct                                                           <  2:121159/132‑1 (MQ=255)                                                                              aTTACTTGAAAAATATCAAAATTAAAGATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATcttctt                                                          <  2:744419/141‑1 (MQ=255)                                                                              aTTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATcttctt                                                          >  1:461198/1‑141 (MQ=255)                                                                              aTTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATcttctt                                                          >  1:747415/1‑141 (MQ=255)                                                                              aTTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACAAGAACATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACGTAATAATGTTTTCATAATcttctt                                                          >  1:448778/1‑141 (MQ=255)                                                                               ttACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCttcttc                                                         <  2:431383/141‑1 (MQ=255)                                                                                tACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATcttcttgg                                                        >  1:398307/1‑139 (MQ=255)                                                                                   gTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGact                                                     <  1:674734/141‑1 (MQ=255)                                                                                   gTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGact                                                     <  1:255079/141‑1 (MQ=255)                                                                                    tGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGacta                                                    <  1:486234/141‑1 (MQ=255)                                                                                        aaaTATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTa                                                >  2:765978/1‑141 (MQ=255)                                                                                            atCAAAATTAAATATAGATGATCATTAGGTAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTc                                            >  1:414947/1‑141 (MQ=255)                                                                                             tCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCt                                           >  2:525622/1‑141 (MQ=255)                                                                                                            gatgatCATTAAATAACTACATGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGa                            <  2:375306/141‑1 (MQ=255)                                                                                                              tgatCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGaaa                          >  2:519816/1‑141 (MQ=255)                                                                                                               tatCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGaaaa                         <  1:505111/140‑1 (MQ=255)                                                                                                                   aTTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTACTTCTTTAAGATATTCGTGAAAAaaga                     >  2:459742/1‑141 (MQ=255)                                                                                                                    ttAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAGTTCTTTAAGATATTCGTGAAAAGAGAc                    >  1:3820/1‑141 (MQ=255)                                                                                                                    gagttttatttataaacaataaaaAACCAAGTGCA‑GAAAGTTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTctctaagatattcctgtcacgtgct                    <  2:660165‑M1/117‑13 (MQ=255)                                                                                                                     tAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACa                   >  1:508334/1‑141 (MQ=255)                                                                                                                     tAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACa                   >  2:623822/1‑141 (MQ=255)                                                                                                                       gATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACAtt                 <  1:765978/141‑1 (MQ=255)                                                                                                                             tactTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGCAAAGAGACATTACGCTa           >  2:519578/1‑141 (MQ=255)                                                                                                                             tactTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTAGGTTTTTTATTGTTAATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTAAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTa           >  2:230952/1‑141 (MQ=255)                                                                                                                              actTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAg          <  2:110452/141‑1 (MQ=255)                                                                                                                                ttGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGCTAACCGGCAAAAGAGCCATTACACTAGtt        >  2:741459/1‑141 (MQ=255)                                                                                                                                ttGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGtt        <  1:655185/141‑1 (MQ=255)                                                                                                                                ttGATCATTACAAACCAAGTGCA‑ACTTTCTGCACCACGTTTTTTACTGTTTATAAATAAAACTCACTTAATAACGTTTTCATAATCTTCTTCAACTACATAATTCTTTAAGATATTCCTGAAAAGAGACATTACACCAGtc        <  2:288417/141‑2 (MQ=255)                                                                                                                                 tGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTa       <  1:159339/141‑1 (MQ=255)                                                                                                                                   aTCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAACTAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATTTTCGTGAAAAGATACATTACACTAGTTAAt     >  2:491113/1‑141 (MQ=255)                                                                                                                                     cATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAAttt   >  2:410540/1‑141 (MQ=255)                                                                                                                                      ataaaaAACCAAGTGCAGAAAGT‑TGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAAtttt  >  2:736922‑M1/7‑141 (MQ=255)                                                                                                                                            |                                                                                                                                        CATGCGCCATGTGACGTGTTAGTTGTTCGTACTGAAGAGTTACCAGCAGACTTCCAACCACAAGTTGCAACAACTCAATTACGTGAAAAATATCAAAATTAAATATAGATGATCATTAGATAACTACTTGATCATTATGAACCAAGTGCA‑ACTTTCTGCACTTGGTTTTTTATTGTTTATAAATAAAACTCACTTAATAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTT  >  CP000730/1822578‑1822851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.