New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	782414 =	20 (0.870)	4 (0.190)	4/240	NT	18.4%	intergenic (‑209/+133)	USA300HOU_0730/USA300HOU_0731	hypothetical membrane protein/hypothetical lipoprotein
	?	CP000730	782453 =	17 (0.800)					intergenic (‑248/+94)	USA300HOU_0730/USA300HOU_0731	hypothetical membrane protein/hypothetical lipoprotein

CGCTAAATTAAAATAATCAATTTCTGAGTTAAACTTTTATTTACAACATACTATTACTATACATTACAAATTTTTAAAATATACATTACACTCATTACTCAATGGAAAGCGTATGATTTC‑ACAGCCCCCCTAGCTTGTAGAAATCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/782562‑782414 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTATTTTAATTTAGCGCCGCCGAAGATGACGTGAGCT  >  CP000730/782453‑782583                                                                                                                                                                                                                                                                                           CGCTAAATTAAAATAATCAATTTCTGAGTTAAACTTTTATTTACAACATACTATTACTATACATTACAAATTTTTAAAATATACATTACACTCATTACTCAATGGAAAGCGTATGATTTC‑ACAGCCCCCCTAGCTTGTAGA                                                                                                                                             <  2:243382/141‑1                     TTTCTGAGTTAAACTTTTATTTACAACATACTATTACTATACATTACAAATTTTTAAAATATACATTACACTCATTACTCAATGGAAAGCGTATGATTTC‑ACAGCCCACCTAGCTTGTAGGAATCATACGCTTTCCATTGA                                                                                                                         >  1:6237/1‑141                                                        ACTATACATTACAAATTTTTAAAATATACATTACACTCATTACTCAATGGAAAGCGTATGATTTCTACAAGCTAGGGGGGCTGT‑GAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAA                                                                                      >  2:96179/1‑141                                                        ACTATACATTACAAATTTTTAAAATATACATTACACTCATTACTCAATGGAAAGCGTATGATTTC‑ACAGCCCCCCTAGCTTGTAGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAA                                                                                      >  1:96179/1‑141                                                                                                   TCAATGGAAAGCGTATGATTTC‑ACAGCCCCCCTAGCTTGTAGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAA                                           <  2:6237/141‑1                                                                                                                                             GAAATCATACGCTTTCCATTTAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTATTTTAATTTAGCGCCGCCGAAGATGACGTGAGCT  <  1:123758/141‑1                                                                                                                                                                                                                                                                                           CGCTAAATTAAAATAATCAATTTCTGAGTTAAACTTTTATTTACAACATACTATTACTATACATTACAAATTTTTAAAATATACATTACACTCATTACTCAATGGAAAGCGTATGATTTC‑ACAGCCCCCCTAGCTTGTAGAAATCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/782562‑782414 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTATTTTAATTTAGCGCCGCCGAAGATGACGTGAGCT  >  CP000730/782453‑782583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.