| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2097351 | 78 (1.050) | 3 (0.040) | 3/242 | NT | 3.8% | coding (69/1485 nt) | USA300HOU_1958 | hypothetical bacteriophage protein |
| ? | CP000730 | = 2097358 | 80 (1.150) | coding (62/1485 nt) | USA300HOU_1958 | hypothetical bacteriophage protein | |||||
CATGTGTTTTAAAGCCGTTGTGAGATAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCCTTTATATATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTAAAAGAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2097203‑2097351‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagagggt‑TTGAAATACCCTCTTTTAATTATGTTTTAAAAACTGAAAATGTAGATGGACGTTCGGGGTCTATATATAAAGGGCGTAGGCTTGAATCTTATAGTTTTGATATACCTTTGGTGGTACGTAATGACTATTTATCTCACA < CP000730/2097358‑2097221 CATGTGTTTTAAAGCCGTTGTGAGATAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCCTTTATATATAGCCCCCGAACGTCCATCTACATTTTCAGTATTTAAAACATAATTAA < 1:427400/141‑1CATGTGTTTTAAAGCCGTTGTGAGATAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCCTTTATATATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTAA > 1:731867/1‑141 GTTTTAAAACCGTTGTGAGATAAATAGTCATTACGTACCACCAAAGGTATATGAAAACTATAAGATTCAAGCCTACGCCCTTTATGTATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTCAAAGAG < 2:544473/141‑1 TTTAAAGCCGTTGTGAGATAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCCTTTATATATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTAAAAGAGGG < 2:271326/141‑1 TTTAAAGCCGTTGGGAGATAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCTGTTATATATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTAAAAGAGGG < 2:464970/141‑1 TTAAAGCCGTTGTGAGATAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCCTTTATATATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTAAAAGAGGGT < 2:108154/141‑1 TAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCCTTTATATATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTAAAAGAGGGT‑TTGAAATACCCTCTTTT < 2:692933/141‑1 CATTTTCAGTTTTTAAAACATAATTAAAAGAGGGTATTTCAA‑ACCCTCTTTTAATTATGTTTTAAAAACTGAAAATGTAGATGGACGTTCGGGGTCTATATATAAAGGGCGTAGGCTTGAATCTTATAGTTTTGATATACC > 2:100622/1‑141 AGTTTTTAAAACATAATTAAAAGAGGGT‑ATTTCAAACCCTCTTTTAATTATGTTTTAAAAACTGAAAATGTAGATGGACGTTCGGGGTCTATATATAAAGGGCGTAGGCTTGAATCTTATAGTTTTGGTATACCTTTGGTG > 2:550640/1‑141 GAGGGT‑TTGAAATACCCTCTTTTAATTATGTTTTAAAAACTGAAAATGTAGATGGACGTTCGGGGTCTATATATAAAGGGCGTAGGCTTGAATCTTATAGTTTTGATATACCTTTGGTGGTACGTAATGACTATTTATCTC > 2:777110/1‑141 GAGGGT‑GTGAAATTCCCTCTTTTAATTATGTTTTAAAAACTGAAAATGTCGATGGACGTTCGGGGTCTATATATAAAGGGCGTAGGCTTGAATCTTATAGTTGTGATATACCTTTGGTGGTACGTAATGACTATTTATCTC < 2:276834/141‑1 GGT‑TTGAAATACCCTCTTTTAATTATGTTTTAAAAACTGAAAATGTAGATGGACGTTCGGGGTCTATATATAAAGGGCGTAGGCTTGAATCTTATAGTTTTGATATACCTTTGGTGGTACGTAATGACTATTTATCTCACA > 2:437935/1‑141 CATGTGTTTTAAAGCCGTTGTGAGATAAATAGTCATTACGTACCACCAAAGGTATATCAAAACTATAAGATTCAAGCCTACGCCCTTTATATATAGACCCCGAACGTCCATCTACATTTTCAGTTTTTAAAACATAATTAAAAGAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2097203‑2097351‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagagggt‑TTGAAATACCCTCTTTTAATTATGTTTTAAAAACTGAAAATGTAGATGGACGTTCGGGGTCTATATATAAAGGGCGTAGGCTTGAATCTTATAGTTTTGATATACCTTTGGTGGTACGTAATGACTATTTATCTCACA < CP000730/2097358‑2097221 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |