Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,8480CA73.8% 324.6 / 138.2 207intergenic (‑931/‑237)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (27/27);  new base A (68/84);  total (96/111)
Fisher's exact test for biased strand distribution p-value = 5.28e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.50e-02
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 207 total aligned reads displayed.

AGAATTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAAT  >  CP000730/1929709‑1929983
                                                                                                                                           |                                                                                                                                             
   aTTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCagag                                                                                                                                           <  1:111423/141‑1 (MQ=255)
    tttGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCagaga                                                                                                                                          <  1:631099/141‑1 (MQ=255)
                         gATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACCCAGAGAGGAGGGGTA‑T‑AA‑G‑G‑TGGTGCt                                                                                                                >  1:426188/1‑141 (MQ=255)
                             cAATCTATCAGCTAGAATCATATAACTTATCAGATGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑Att                                                                                                           <  1:17324/141‑1 (MQ=255)
                               aTCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGAATATTGGCCGATGATGTAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑GGATGCTT‑Gttgt                                                                                                         >  1:608019/1‑139 (MQ=255)
                                       gCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCGATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTcaca                                                                                                 >  1:967235/1‑141 (MQ=255)
                                            aaTCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGCTGCTT‑ATTTTCGTTCACATCATa                                                                                            >  1:82512/1‑141 (MQ=255)
                                             aTCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCACTTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAg                                                                                           <  1:757344/141‑1 (MQ=255)
                                             aTCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAg                                                                                           >  1:1157875/1‑141 (MQ=255)
                                                             atcggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGCGTCGCCTATCTCTCAGGCGTCAA‑‑TGGACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCCGTGGc                                                                          >  1:46988/15‑141 (MQ=255)
                                                             atcggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                          >  1:664111/15‑141 (MQ=255)
                                                             atcggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TA‑C‑TTTGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                          >  1:744380/15‑141 (MQ=255)
                                                             atcggaagtaaatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                          >  1:865399/15‑141 (MQ=255)
                                                              aaGCAAGTGACTGTGCTTGTATATTTGCCGATGATATACTAGTAGAGCCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                          >  1:178820/1‑141 (MQ=255)
                                                               cggaagtagattggCTTGTATCTTCACAGATGGTATAATAATAGAGTTGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtg                                                                        <  1:284243/128‑1 (MQ=255)
                                                               cggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtg                                                                        <  1:750142/129‑1 (MQ=255)
                                                                ggaggtggagatgCTTGTATATTCACAGAGGGTATAGTAATAGAGGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGCGGTGCA‑TCAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                       <  1:789687/130‑1 (MQ=255)
                                                                ggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                       <  1:762080/130‑1 (MQ=255)
                                                                ggaagtagatatgCTTATATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                       <  1:1155764/130‑1 (MQ=255)
                                                                 gaagtagatatgCTTGTATATTCACAGATGGTATAATATTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TA‑CTT‑TGCTAATC‑ATTTTCGTTCACATCATAGGTCCAGTCATCAGTGGCtgtg                                                                      <  1:775460/131‑1 (MQ=255)
                                                                 gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgtg                                                                      >  1:375980/11‑141 (MQ=255)
                                                                 gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgtg                                                                      <  1:607754/131‑1 (MQ=255)
                                                                 gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgtg                                                                      <  1:495867/131‑1 (MQ=255)
                                                                 gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTAGCTCGCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgtg                                                                      >  1:523427/11‑141 (MQ=255)
                                                                  aagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGc                                                                     <  1:1041961/132‑1 (MQ=255)
                                                                   agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGct                                                                    <  1:696922/133‑2 (MQ=255)
                                                                   agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGct                                                                    <  1:248816/133‑2 (MQ=255)
                                                                   aGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGGGAC‑A‑AA‑G‑G‑GGATGCTG‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGc                                                                     >  1:274486/1‑141 (MQ=255)
                                                                    gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TA‑CTT‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctg                                                                   >  1:313477/8‑139 (MQ=255)
                                                                    gtagatatgCTTGTAGACTCACAGATGGTAGAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTTATCAGTGGCTGTGctg                                                                   <  1:651023/134‑3 (MQ=255)
                                                                    gTGACGGTGCTCGTATACTTGCCGATGATATAATAGTAGAGGCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGcc                                                                    <  1:90382/141‑1 (MQ=255)
                                                                     tagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgt                                                                  <  1:191888/135‑4 (MQ=255)
                                                                     gagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTATCGTGACTCAAGT‑‑GAAGAAGATAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgt                                                                  <  1:226194/135‑4 (MQ=255)
                                                                      agatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgtt                                                                 >  1:363184/6‑137 (MQ=255)
                                                                        cTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTg                                                                <  1:164271/141‑1 (MQ=255)
                                                                        cTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTg                                                                <  1:934729/141‑1 (MQ=255)
                                                                        cTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGGCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTg                                                                <  1:263953/141‑1 (MQ=255)
                                                                        atatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgttgc                                                               <  1:263363/138‑7 (MQ=255)
                                                                           tgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGt                                                             <  1:218406/141‑1 (MQ=255)
                                                                            gCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                                                           <  1:478577/141‑3 (MQ=255)
                                                                                gTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattata                                                       <  1:709784/141‑7 (MQ=255)
                                                                                gTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattata                                                       <  1:979020/141‑7 (MQ=255)
                                                                                 tataTTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGttttttt                                                       <  1:323851/141‑1 (MQ=255)
                                                                                      tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAtt                                                 >  1:1036745/6‑141 (MQ=255)
                                                                                       tGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTAtt                                                 >  1:688153/1‑141 (MQ=255)
                                                                                         cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                              >  1:1059432/3‑141 (MQ=255)
                                                                                         cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                              >  1:1195223/3‑141 (MQ=255)
                                                                                          agtaggaataataataGAGTCGCCGATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                             <  1:860205/134‑1 (MQ=255)
                                                                                             tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                          <  1:952024/138‑4 (MQ=255)
                                                                                             cggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                          <  1:7669/138‑4 (MQ=255)
                                                                                              ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                         <  1:785005/139‑1 (MQ=255)
                                                                                              ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                         >  1:18727/3‑141 (MQ=255)
                                                                                              ggtataATAATAGAGTCGCCTACCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                         <  1:638976/139‑1 (MQ=255)
                                                                                              ggtataATAATAGAGGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGTC‑G‑AACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATTAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                         <  1:567894/139‑1 (MQ=255)
                                                                                              gatATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAg                                          >  1:518255/1‑141 (MQ=255)
                                                                                                 ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                      >  1:1096169/1‑139 (MQ=255)
                                                                                                   aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACg                                    >  1:140341/1‑141 (MQ=255)
                                                                                                   aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACg                                    <  1:1187643/141‑1 (MQ=255)
                                                                                                    ataatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGGGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                   >  1:500026/5‑141 (MQ=255)
                                                                                                    ataatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGtcaacgc                                   >  1:408210/5‑135 (MQ=255)
                                                                                                    ataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TA‑C‑TTTGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATCGGCTTAGTAAACGc                                   <  1:625886/141‑1 (MQ=255)
                                                                                                     tagtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCCCCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGc                                   <  1:399065/141‑1 (MQ=255)
                                                                                                     taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGATGTTGCTTATTATACTTATTGGCTTAGTAAACGCa                                  <  1:577424/138‑1 (MQ=255)
                                                                                                      aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaa                                 <  1:974108/139‑1 (MQ=255)
                                                                                                      aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaa                                 >  1:730975/3‑141 (MQ=255)
                                                                                                      aatagAGTCCCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑AGTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaa                                 <  1:458221/139‑1 (MQ=255)
                                                                                                        tagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAAt                                <  1:6056/141‑1 (MQ=255)
                                                                                                        aagagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaca                               <  1:117787/140‑3 (MQ=255)
                                                                                                           agTCGCCTATCTCTCAGGCGTTAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑N‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                            <  1:938697/141‑6 (MQ=255)
                                                                                                           agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                            <  1:31063/141‑6 (MQ=255)
                                                                                                            gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TA‑C‑TTTGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                           >  1:317207/1‑135 (MQ=255)
                                                                                                              cGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATCCaaaa                          <  1:598075/141‑1 (MQ=255)
                                                                                                              cGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                         >  1:77955/1‑133 (MQ=255)
                                                                                                              cGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑GA‑C‑TTTGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                         >  1:1067975/1‑133 (MQ=255)
                                                                                                               gCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTTATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAAt                         <  1:720508/141‑1 (MQ=255)
                                                                                                               gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCagcaaataaat                        >  1:978384/1‑131 (MQ=255)
                                                                                                               gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                        >  1:489197/1‑132 (MQ=255)
                                                                                                                ccTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATa                        >  1:306647/1‑141 (MQ=255)
                                                                                                                ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                       >  1:1144503/1‑131 (MQ=255)
                                                                                                                 cTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAg                       >  1:501790/1‑141 (MQ=255)
                                                                                                                 cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCAACACATAAttaa                      >  1:330212/1‑138 (MQ=255)
                                                                                                                  tATCTCTCAGGCGTCAATTTAGACGCAGAGCGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATCTTCGTTCACATCATAGCACCCGTCATCAGTGGCCGTGCCATGGCGTTTTTTTCTTACTGGCTCAGTAGCCGCAATCCAAAATAgg                      >  1:92434/1‑141 (MQ=255)
                                                                                                                  tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TC‑G‑T‑TTGCGAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaaa                     >  1:231940/1‑129 (MQ=255)
                                                                                                                  tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGcgacaaataattaat                     >  1:439651/1‑127 (MQ=255)
                                                                                                                  tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattcat                     >  1:10785/1‑129 (MQ=255)
                                                                                                                  tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TA‑CTT‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                     >  1:380844/1‑129 (MQ=255)
                                                                                                                   aTCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGt                     >  1:644885/1‑141 (MQ=255)
                                                                                                                   aTCTCTCAGGCGTCAATT‑‑GACGAAGAGGGGGGGTGCATT‑AC‑T‑T‑TGCTCATC‑ATTTTCGTTAACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGACTTAGTAAACGCaggaaataattaaga                    >  1:298266/1‑127 (MQ=255)
                                                                                                                   aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                    <  1:820379/141‑14 (MQ=255)
                                                                                                                   aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                    >  1:492117/1‑128 (MQ=255)
                                                                                                                   aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                    >  1:658626/1‑128 (MQ=255)
                                                                                                                   aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                    <  1:546493/141‑14 (MQ=255)
                                                                                                                   aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                    >  1:965972/1‑128 (MQ=255)
                                                                                                                    tctctcAGGCGTCAATT‑‑GACGGAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaatag                   >  1:1131445/1‑127 (MQ=255)
                                                                                                                    tctctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaatag                   >  1:180/1‑127 (MQ=255)
                                                                                                                     ctctcAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGa                   <  1:1011347/141‑1 (MQ=255)
                                                                                                                           ggCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACAtata             >  1:132270/1‑141 (MQ=255)
                                                                                                                               tCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCg         >  1:448631/1‑141 (MQ=255)
                                                                                                                                    ttAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCa    >  1:1153555/1‑141 (MQ=255)
                                                                                                                                      aGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAAt  >  1:1066500/1‑141 (MQ=255)
                                                                                                                                           |                                                                                                                                             
AGAATTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAAT  >  CP000730/1929709‑1929983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑