Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,9250TA72.9% 182.4 / 68.4 107intergenic (‑1008/‑160)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (14/15);  new base A (51/27);  total (65/42)
Fisher's exact test for biased strand distribution p-value = 1.23e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 112 total aligned reads displayed.

CTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAAT  >  CP000730/1929786‑1930055
                                                                                                                                                |                                                                                                                                  
cTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGATAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGtatt                                                                                                                                  >  1:212596/1‑141 (MQ=255)
  tgtatattcacagatggtATCATAATAGAGTCGCCTATCTCTCAAGCGTCAATT‑‑GACGTAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGCGCTGT‑TGCGtattat                                                                                                                                >  1:562686/13‑139 (MQ=255)
   gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGtattata                                                                                                                               >  1:808288/12‑138 (MQ=255)
   gTATATTTGCCGATGCTATAATAGGAGAGTCGCCTATCTCGCAGGCGGCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTGCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGtttttt                                                                                                                                <  1:28385/141‑1 (MQ=255)
        ttcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTAt                                                                                                                          >  1:381859/7‑141 (MQ=255)
         tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGC‑TGCGTATTATACTTAtt                                                                                                                         >  1:118684/6‑141 (MQ=255)
          cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTg                                                                                                                        >  1:340588/5‑141 (MQ=255)
           acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTgg                                                                                                                       <  1:272184/138‑1 (MQ=255)
            cagatggtATAATAATAGAGTCGCGTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGc                                                                                                                      >  1:676862/3‑141 (MQ=255)
            cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGc                                                                                                                      >  1:851500/3‑141 (MQ=255)
              gatgatATAAGAGTAGCGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCt                                                                                                                     <  1:710638/141‑1 (MQ=255)
                tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCttag                                                                                                                  <  1:652955/138‑4 (MQ=255)
                tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCttag                                                                                                                  <  1:791581/138‑4 (MQ=255)
                tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAg                                                                                                                  >  1:897533/4‑141 (MQ=255)
                tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAg                                                                                                                  >  1:434614/4‑141 (MQ=255)
                tggtataATAATAGAGTCGCCTATCTCTAAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCttag                                                                                                                  <  1:20763/138‑4 (MQ=255)
                 ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGt                                                                                                                 <  1:9032/139‑1 (MQ=255)
                  gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTa                                                                                                                >  1:457220/2‑141 (MQ=255)
                  gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTa                                                                                                                >  1:903382/2‑141 (MQ=255)
                  gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTa                                                                                                                >  1:522451/2‑141 (MQ=255)
                  gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTAGTTAAGAACTTAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTa                                                                                                                >  1:674037/2‑141 (MQ=255)
                  gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTa                                                                                                                >  1:522067/2‑141 (MQ=255)
                   tataATAATAGAGTCGCCTGTCTCTCAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaa                                                                                                               >  1:492704/1‑140 (MQ=255)
                    ataataataGAGTTGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaa                                                                                                              <  1:734922/141‑3 (MQ=255)
                    ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaa                                                                                                              <  1:232504/141‑3 (MQ=255)
                    ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaa                                                                                                              >  1:218836/1‑139 (MQ=255)
                    ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaa                                                                                                              <  1:726146/141‑3 (MQ=255)
                    ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaa                                                                                                              >  1:409396/1‑139 (MQ=255)
                    agaataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaa                                                                                                              <  1:322338/139‑3 (MQ=255)
                     taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac                                                                                                             <  1:92418/141‑4 (MQ=255)
                     taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac                                                                                                             <  1:904626/141‑4 (MQ=255)
                     taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac                                                                                                             <  1:389641/141‑4 (MQ=255)
                     taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac                                                                                                             <  1:542973/141‑4 (MQ=255)
                     taataaTAGAGTCGCCTACCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac                                                                                                             <  1:782190/141‑4 (MQ=255)
                      aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACg                                                                                                            <  1:105053/141‑1 (MQ=255)
                      aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATTCTTATTGGCTTAGTAAACg                                                                                                            <  1:509398/141‑1 (MQ=255)
                       ataatagAGTCGCCTATCTCTCAGGCTTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGc                                                                                                           <  1:568654/137‑1 (MQ=255)
                       ataGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACg                                                                                                            >  1:538253/1‑141 (MQ=255)
                           tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaaca                                                                                                       <  1:273389/141‑3 (MQ=255)
                            agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTGATCGGTGGCTGTGCTGT‑TGCGTAATATACTTATTGGCTTAGTAAACGGaacca                                                                                                      >  1:102543/1‑138 (MQ=255)
                            agagTCGCCTATCTCTCAGCCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                                                                      >  1:604522/1‑138 (MQ=255)
                             gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATACGAGGATCT‑CGATGTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaa                                                                                                     >  1:628115/1‑137 (MQ=255)
                              agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                                                                                                    <  1:921946/141‑6 (MQ=255)
                              agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                                                                                                    <  1:259167/141‑6 (MQ=255)
                              agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAA‑T‑T‑TGCTAATCCTTCTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                                                                                                    >  1:183951/1‑136 (MQ=255)
                              agTCGCCTATCTCTCAGGCGACAATTTACACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGCTGCTTATTTTCGTTCACATCATAGAACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACa                                                                                                     >  1:599856/1‑141 (MQ=255)
                               gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                                                                                                   >  1:744152/1‑135 (MQ=255)
                                tCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                                                                                                  >  1:306349/1‑134 (MQ=255)
                                 cGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                                                                 >  1:796012/1‑133 (MQ=255)
                                  gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                                                                <  1:909744/141‑10 (MQ=255)
                                  gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                                                                >  1:750229/1‑132 (MQ=255)
                                  gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                                                                >  1:908762/1‑132 (MQ=255)
                                  gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGCCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                                                                <  1:849069/141‑10 (MQ=255)
                                   ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                                                                               >  1:333302/1‑131 (MQ=255)
                                    cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaa                                                                                              >  1:867149/1‑130 (MQ=255)
                                     tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATCCTTATTGGCTTAGTAAACGCaacaaataattaat                                                                                             >  1:70653/1‑129 (MQ=255)
                                     tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                                                             >  1:568448/1‑129 (MQ=255)
                                     tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                                                             >  1:385516/1‑129 (MQ=255)
                                     tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                                                             >  1:135159/1‑129 (MQ=255)
                                     tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATAATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTCGTAGACTCaacagatgattaat                                                                                             >  1:321202/1‑129 (MQ=255)
                                     tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                                                             >  1:74751/1‑129 (MQ=255)
                                     tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAAGTGCATTAC‑T‑T‑TGCTAATCATTTTAGTTCACATCATAGCACCAGTCACCCGTGGCTATGTTGT‑GGCGTATTTTACTTATTGGCTTAGTCAACGCaacaaataattaat                                                                                             >  1:210941/1‑129 (MQ=255)
                                      aTCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGt                                                                                             >  1:611181/1‑141 (MQ=255)
                                      aTCTCTCAGGCGTCAATT‑‑GACGAGGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:775889/1‑128 (MQ=255)
                                      aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTCGTAAACCCaacaaataattaata                                                                                            >  1:234487/1‑128 (MQ=255)
                                      aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:245740/1‑128 (MQ=255)
                                      aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:740294/1‑128 (MQ=255)
                                      aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:606846/1‑128 (MQ=255)
                                      aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:767529/1‑128 (MQ=255)
                                      aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:118851/1‑128 (MQ=255)
                                      aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            <  1:667681/141‑14 (MQ=255)
                                      aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:731859/1‑128 (MQ=255)
                                      aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:747941/1‑128 (MQ=255)
                                      aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:854406/1‑128 (MQ=255)
                                      aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:408851/1‑128 (MQ=255)
                                       tctctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaatag                                                                                           >  1:794522/1‑127 (MQ=255)
                                         tctcAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCGTAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTCTTGGCTAAGGAGACGCAATACAAAATAgaggac                                                                                          >  1:33226/1‑136 (MQ=255)
                                             aGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACatat                                                                                      >  1:331022/1‑141 (MQ=255)
                                               gCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAg                                                                                    <  1:849353/141‑1 (MQ=255)
                                                     aTTTAGACGCGGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCAc                                                                              >  1:228735/1‑141 (MQ=255)
                                                      tttAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCAcc                                                                             <  1:313939/141‑1 (MQ=255)
                                                          gACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTCTCTTATTGGCTAAGTAGACGCAATACAAAAGAGGTGACATATAGCCGCACCAATa                                                                         <  1:677712/141‑1 (MQ=255)
                                                                      aggTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCa                                                             >  1:104774/1‑141 (MQ=255)
                                                                      aggTGTA‑TAA‑A‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCa                                                             <  1:250547/141‑1 (MQ=255)
                                                                                           cTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAg                                            <  1:841347/141‑1 (MQ=255)
                                                                                                 ttCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGAtt                                      <  1:298425/141‑1 (MQ=255)
                                                                                                 ttCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGAtt                                      <  1:299200/141‑1 (MQ=255)
                                                                                                   cGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATggg                                    >  1:310182/1‑141 (MQ=255)
                                                                                                   cGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGGGAGGGGATTgg                                    >  1:875384/1‑141 (MQ=255)
                                                                                                         catcatAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGATAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGTTTGGTGtata                              <  1:673134/141‑1 (MQ=255)
                                                                                                           tcatAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAg                            >  1:611070/1‑141 (MQ=255)
                                                                                                             atAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTGGGCGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTa                          >  1:487725/1‑141 (MQ=255)
                                                                                                             atAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTa                          >  1:696419/1‑141 (MQ=255)
                                                                                                              tAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTaa                         >  1:39588/1‑141 (MQ=255)
                                                                                                                   ccAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTTGTGTATAAGTAAATACt                    <  1:640682/141‑1 (MQ=255)
                                                                                                                       tcatcaGTGGCTGGGCCAT‑TGCGTTTTTTTCTTCTTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTAtt                <  1:23824/141‑1 (MQ=255)
                                                                                                                        catcaGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCCATAAAAATCCCCTCACTACCGCACATACGGGGGGGATTGGTGTTTAAGTAAATGCtttttt               >  1:5913/1‑141 (MQ=255)
                                                                                                                          tcaGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTc             <  1:332828/141‑1 (MQ=255)
                                                                                                                                 gtgtgCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCt      <  1:518304/140‑1 (MQ=255)
                                                                                                                                     gCCAT‑GGGGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAAt  <  1:342749/141‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                  
CTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAAT  >  CP000730/1929786‑1930055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑