| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 1,929,941 | 0 | A | T | 68.8% | 133.2 / 81.7 | 96 | intergenic (‑1024/‑144) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (15/15); new base T (44/22); total (59/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.74e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGT > CP000730/1929802‑1930079 | tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAg > 1:890406/4‑141 (MQ=255)tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAg > 1:897533/4‑141 (MQ=255)tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAg > 1:434614/4‑141 (MQ=255) ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGt < 1:9032/139‑1 (MQ=255) gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTa > 1:522451/2‑141 (MQ=255) gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTa > 1:903382/2‑141 (MQ=255) gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTa > 1:457220/2‑141 (MQ=255) gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTAGTTAAGAACTTAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTa > 1:674037/2‑141 (MQ=255) gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTa > 1:522067/2‑141 (MQ=255) tataATAATAGAGTCGCCTGTCTCTCAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaa > 1:492704/1‑140 (MQ=255) tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaa > 1:801580/1‑140 (MQ=255) tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaa > 1:745403/1‑140 (MQ=255) ataataataGAGTTGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaa < 1:734922/141‑3 (MQ=255) ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaa > 1:218836/1‑139 (MQ=255) ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaa < 1:232504/141‑3 (MQ=255) ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaa < 1:726146/141‑3 (MQ=255) ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaa > 1:409396/1‑139 (MQ=255) agaataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaa < 1:322338/139‑3 (MQ=255) taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac < 1:389641/141‑4 (MQ=255) taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac < 1:542973/141‑4 (MQ=255) taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac < 1:92418/141‑4 (MQ=255) taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac < 1:904626/141‑4 (MQ=255) taataaTAGAGTCGCCTACCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac < 1:782190/141‑4 (MQ=255) aaataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac < 1:543048/140‑4 (MQ=255) aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACg < 1:105053/141‑1 (MQ=255) aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATTCTTATTGGCTTAGTAAACg < 1:509398/141‑1 (MQ=255) aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACg < 1:212055/141‑1 (MQ=255) ataatagAGTCGCCTATCTCTCAGGCTTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGc < 1:568654/137‑1 (MQ=255) ataGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACg > 1:538253/1‑141 (MQ=255) tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaaca < 1:273389/141‑3 (MQ=255) agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTGATCGGTGGCTGTGCTGT‑TGCGTAATATACTTATTGGCTTAGTAAACGGaacca > 1:102543/1‑138 (MQ=255) agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaa > 1:615824/1‑138 (MQ=255) agagTCGCCTATCTCTCAGCCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaa > 1:604522/1‑138 (MQ=255) gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaa < 1:468046/141‑5 (MQ=255) gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATACGAGGATCT‑CGATGTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaa > 1:628115/1‑137 (MQ=255) agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat < 1:259167/141‑6 (MQ=255) agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat < 1:921946/141‑6 (MQ=255) agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAA‑T‑T‑TGCTAATCCTTCTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat > 1:183951/1‑136 (MQ=255) agTCGCCTATCTCTCAGGCGACAATTTACACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGCTGCTTATTTTCGTTCACATCATAGAACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACa > 1:599856/1‑141 (MQ=255) gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata > 1:744152/1‑135 (MQ=255) tCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa > 1:306349/1‑134 (MQ=255) cGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat > 1:796012/1‑133 (MQ=255) gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt < 1:909744/141‑10 (MQ=255) gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt > 1:750229/1‑132 (MQ=255) gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt > 1:908762/1‑132 (MQ=255) gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGCCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt < 1:849069/141‑10 (MQ=255) ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta > 1:333302/1‑131 (MQ=255) cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaa > 1:867149/1‑130 (MQ=255) tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATCCTTATTGGCTTAGTAAACGCaacaaataattaat > 1:70653/1‑129 (MQ=255) tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat > 1:135159/1‑129 (MQ=255) tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat > 1:385516/1‑129 (MQ=255) tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat > 1:568448/1‑129 (MQ=255) tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATAATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTCGTAGACTCaacagatgattaat > 1:321202/1‑129 (MQ=255) tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat > 1:74751/1‑129 (MQ=255) tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAAGTGCATTAC‑T‑T‑TGCTAATCATTTTAGTTCACATCATAGCACCAGTCACCCGTGGCTATGTTGT‑GGCGTATTTTACTTATTGGCTTAGTCAACGCaacaaataattaat > 1:210941/1‑129 (MQ=255) aTCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGt > 1:611181/1‑141 (MQ=255) aTCTCTCAGGCGTCAATT‑‑GACGAGGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 1:775889/1‑128 (MQ=255) aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTCGTAAACCCaacaaataattaata > 1:234487/1‑128 (MQ=255) aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata < 1:667681/141‑14 (MQ=255) aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 1:245740/1‑128 (MQ=255) aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 1:118851/1‑128 (MQ=255) aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 1:767529/1‑128 (MQ=255) aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 1:606846/1‑128 (MQ=255) aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 1:740294/1‑128 (MQ=255) aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 1:747941/1‑128 (MQ=255) aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 1:731859/1‑128 (MQ=255) aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 1:408851/1‑128 (MQ=255) aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata > 1:854406/1‑128 (MQ=255) tctctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaatag > 1:794522/1‑127 (MQ=255) tctcAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCGTAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTCTTGGCTAAGGAGACGCAATACAAAATAgaggac > 1:33226/1‑136 (MQ=255) aGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACatat > 1:331022/1‑141 (MQ=255) gCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAg < 1:849353/141‑1 (MQ=255) aTTTAGACGCGGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCAc > 1:228735/1‑141 (MQ=255) tttAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCAcc < 1:313939/141‑1 (MQ=255) gACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTCTCTTATTGGCTAAGTAGACGCAATACAAAAGAGGTGACATATAGCCGCACCAATa < 1:677712/141‑1 (MQ=255) aggTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCa > 1:104774/1‑141 (MQ=255) aggTGTA‑TAA‑A‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCa < 1:250547/141‑1 (MQ=255) gtgtA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACt < 1:929242/141‑1 (MQ=255) cTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAg < 1:841347/141‑1 (MQ=255) ttCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGAtt < 1:298425/141‑1 (MQ=255) ttCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGAtt < 1:299200/141‑1 (MQ=255) cGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATggg > 1:310182/1‑141 (MQ=255) cGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGGGAGGGGATTgg > 1:875384/1‑141 (MQ=255) catcatAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGATAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGTTTGGTGtata < 1:673134/141‑1 (MQ=255) tcatAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAg > 1:611070/1‑141 (MQ=255) atAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTGGGCGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTa > 1:487725/1‑141 (MQ=255) atAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTa > 1:696419/1‑141 (MQ=255) tAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTaa > 1:39588/1‑141 (MQ=255) ccAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTTGTGTATAAGTAAATACt < 1:640682/141‑1 (MQ=255) tcatcaGTGGCTGGGCCAT‑TGCGTTTTTTTCTTCTTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTAtt < 1:23824/141‑1 (MQ=255) catcaGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCCATAAAAATCCCCTCACTACCGCACATACGGGGGGGATTGGTGTTTAAGTAAATGCtttttt > 1:5913/1‑141 (MQ=255) tcaGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTc < 1:332828/141‑1 (MQ=255) gtgtgCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCt < 1:518304/140‑1 (MQ=255) gCCAT‑GGGGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAAt < 1:342749/141‑1 (MQ=255) tCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAAtttt > 1:409234/1‑141 (MQ=255) cTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGt < 1:776315/141‑1 (MQ=255) | TGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGT > CP000730/1929802‑1930079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |