New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2476453	44 (0.690)	3 (0.050)	3/248	10.4	7.3%	intergenic (‑198/+42)	tcaA/tcaR	teicoplanin resistance protein TcaA/transcriptional regulator TcaR
	?	CP000730	= 2476476	36 (0.620)					intergenic (‑221/+19)	tcaA/tcaR	teicoplanin resistance protein TcaA/transcriptional regulator TcaR
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATC  >  CP000730/2476317‑2476593                                                                                                                                         |                                                                                                                                              tattTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAataca                                                                                                                                           >  1:79403/1‑141 (MQ=255)  attTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAatacat                                                                                                                                          <  2:541487/141‑1 (MQ=255)    tttACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAatacatac                                                                                                                                        >  1:653497/1‑141 (MQ=255)            tattattTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAg                                                                                                                                >  2:63292/1‑141 (MQ=255)             attattTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGt                                                                                                                               <  1:622617/141‑1 (MQ=255)             attattTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGt                                                                                                                               <  1:132032/141‑1 (MQ=255)                 ttttACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTta                                                                                                                           <  2:652197/141‑1 (MQ=255)                 tttgtaaaaTATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATCATAACTAAAAAGAAAGTATTCACTACATACATATTTAGTCTta                                                                                                                           >  2:36145/7‑141 (MQ=255)                   ttACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTtata                                                                                                                         >  1:523207/1‑141 (MQ=255)                   ttACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTtata                                                                                                                         >  2:470124/1‑141 (MQ=255)                       aaaTATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTg                                                                                                                     >  1:91276/1‑141 (MQ=255)                           attatCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑Aaca                                                                                                                <  1:577603/141‑1 (MQ=255)                                    aGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCaaaa                                                                                                       <  2:174589/141‑1 (MQ=255)                                            aTTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGCAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTAttt                                                                                               <  2:559642/141‑1 (MQ=255)                                                    aaTGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGc                                                                                       <  2:270892/141‑1 (MQ=255)                                                       gATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCtat                                                                                    >  2:47671/1‑141 (MQ=255)                                                        aTTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCtata                                                                                   >  1:243920/1‑141 (MQ=255)                                                        aTTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCtata                                                                                   <  2:85097/141‑1 (MQ=255)                                                         ttAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTatat                                                                                  >  1:426774/1‑141 (MQ=255)                                                             ctttactttaGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGttt                                                                              <  2:484880/141‑1 (MQ=255)                                                                      aGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCgat                                                                     <  2:24534/141‑1 (MQ=255)                                                                            gTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGAtgattga                                                               >  2:173299/1‑141 (MQ=255)                                                                            gTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGAtgattga                                                               <  1:545421/141‑1 (MQ=255)                                                                              aCCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATtgatg                                                             <  1:470124/141‑1 (MQ=255)                                                                              aCCTTATGACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTAA‑AAAAAAAAAAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATtgatg                                                             <  2:198118/141‑1 (MQ=255)                                                                                      aCATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGCTTGCTATATGTTTTAATTCAATGATTGATGACTTCTaa                                                     >  2:262267/1‑141 (MQ=255)                                                                                      aCATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTaa                                                     <  2:2612/141‑1 (MQ=255)                                                                                               atGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCt                                            <  2:658502/141‑1 (MQ=255)                                                                                                 gAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTa                                          <  1:203225/141‑1 (MQ=255)                                                                                                       aCTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACAtttt                                    >  2:86559/1‑141 (MQ=255)                                                                                                       aCTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACAtttt                                    >  2:7533/1‑141 (MQ=255)                                                                                                                  tataACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCCAATACTTGCCTTACATTTTCAATATCTTCa                         >  2:517582/1‑141 (MQ=255)                                                                                                                    taACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGa                       >  1:502507/1‑141 (MQ=255)                                                                                                                    taACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGa                       >  1:60043/1‑141 (MQ=255)                                                                                                                      aCTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTT‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAatcaaaaatttga                     >  2:701168/1‑130 (MQ=255)                                                                                                                      aCTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAAt                     >  1:492079/1‑141 (MQ=255)                                                                                                                        tAAAAAGAAGGTGTTCAGGACATGCATGTATAATC‑TATGTTTGTGGTTCCTTGAAAAATCCATCTACAAGCTCTATATGTTTTAATTCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCTATATCTTCAGAAttt                   <  1:456838/141‑1 (MQ=255)                                                                                                                        tAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAAttt                   <  1:395523/141‑1 (MQ=255)                                                                                                                          aaaaGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAATCCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTaa                 <  1:321214/141‑1 (MQ=255)                                                                                                                                 ggTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGTTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTa          >  2:404595/1‑141 (MQ=255)                                                                                                                                 ggTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCg                                                                       <  1:421698/80‑1 (MQ=255)                                                                                                                                 ggTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCg                                                                       >  2:421698/1‑80 (MQ=255)                                                                                                                                     ttCAATACATACATATTTAGTCTTATATTTG‑AACAACAACAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTaa      <  2:55934/141‑1 (MQ=255)                                                                                                                                         atacatacATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATc  <  1:464135/141‑1 (MQ=255)                                                                                                                                         |                                                                                                                                              TATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAATACATACATATTTAGTCTTATATTTG‑AACACCTTCAAAAACCTATTTATGATTGCTATATGTTTTAATGCGATGATTGATGACTTCTAATACTTGCCTTACATTTTCAATATCTTCAGAATTTAAATCATTAGTAATATC  >  CP000730/2476317‑2476593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.