New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 52495 =143 (0.760)226 (1.210)
+T		 8/294 15.4 63.3% intergenic (+105/‑568) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator
?CP000730 = 52988 121 (0.640)intergenic (+598/‑75) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 121 total aligned reads displayed.

TTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACGT  >  CP000730/52847‑53135
                                                                                                                                              |                                                                                                                                                     
tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGaa                                                                                                                                                <  1:1783973/149‑1 (MQ=32)
          tcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGt                                                                                                                                      <  2:719100/149‑1 (MQ=38)
             tagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATACTATGGTAGa                                                                                                                                   >  1:1698926/1‑149 (MQ=255)
              agtaATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGAc                                                                                                                                  <  2:1949342/149‑1 (MQ=25)
               gtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACg                                                                                                                                 <  1:1088873/149‑1 (MQ=255)
               gtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACg                                                                                                                                 <  1:1867212/149‑1 (MQ=255)
               ataAACGCCCGAAAATCGCCTGAAAGAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACg                                                                                                                                 <  1:136829/148‑1 (MQ=255)
                 aaTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGt                                                                                                                               <  1:952247/149‑1 (MQ=255)
                  aTCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGtt                                                                                                                              <  1:1427620/149‑1 (MQ=255)
                    cgcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGACAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgcg                                                                                                                                                    <  1:1329552/125‑1 (MQ=17)
                    cgcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑g                                                                                                                           <  1:978960/149‑1 (MQ=255)
                       gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGACAATCGCGTGAAATAGTATGGTAGTCGGTTT‑GAGt                                                                                                                        >  1:1243183/1‑149 (MQ=255)
                       gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGt                                                                                                                        >  1:1806954/1‑149 (MQ=255)
                       gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGt                                                                                                                        <  1:158455/149‑1 (MQ=255)
                          caaaTCACTTGAAATAATCACAGGAATCTTTTGAAACCCACCTAGTA‑CGCGCCCGAAAATCACATAAAATCACCAGATGAATCGTTTTAATACATCGTAGGAATCGCGCGAAAATCGCGTTAAATACTATGGTAGACGGTTT‑GATTaaa                                                                                                                     <  2:561609/148‑1 (MQ=255)
                          aaaaaccagTGAAATAATCCGAGGACCCGTTTGAAATAATCGTAGTA‑ATCGCGGGAAAACCTCGTGAAATAAGTACAGGAATCGATTAAAATCATCGTAGTAATCGCGCTAAAAGCTCGTGAAATACTATGGTAGACGGTTT‑GAGTaaa                                                                                                                     <  2:472340/141‑1 (MQ=17)
                           aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAGAACCCGC‑CAGATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAAt                                                                                                                    <  1:556431/149‑1 (MQ=17)
                           aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAAt                                                                                                                    <  1:1593336/149‑1 (MQ=255)
                           aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAAt                                                                                                                    <  1:874646/149‑1 (MQ=255)
                           aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAAGACTATGGTAGACGGTTT‑GAGTAAAt                                                                                                                    <  1:1988890/149‑1 (MQ=255)
                                 cgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATgg                                                                                                              <  1:1437430/149‑1 (MQ=255)
                                 cgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACGATGGTAGACGGTGT‑GAGTAAATTAATgg                                                                                                              <  1:1253948/149‑1 (MQ=255)
                                  gTGAAATGATTAGAGGTATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATGATCAGAGGAATCGTTTGAAATCATCGTAGGAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑a                                                                                                            <  1:1327966/149‑1 (MQ=17)
                                  gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGGATCGTTGGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGATA‑GAGAAAATAAATGG‑a                                                                                                            >  2:1535073/1‑149 (MQ=14)
                                     aaaTAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTa                                                                                                         <  1:175863/149‑1 (MQ=255)
                                        taatCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTAttt                                                                                                      <  2:1687158/149‑1 (MQ=255)
                                        taacCAGAGGAATCGTTTGAAATCATCCTAGTA‑ATCGCCCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTAttt                                                                                                      <  2:63019/149‑1 (MQ=255)
                                        aaatCAGAGGAATCGTTTGAAATGATCGTAGTA‑AGCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTAttt                                                                                                      <  1:8132/148‑1 (MQ=255)
                                             agagGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAata                                                                                                 <  1:1575658/149‑1 (MQ=255)
                                                  aaTCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAAGCGTTTGAGATCATTGAAGGAATCGCGCGAAAAGCAGGGGAAATAGTATTGTAGAAGGATA‑GAGTAAGTTAATGT‑AGTAATTTAatataaat                                                                                            >  2:944733/1‑145 (MQ=14)
                                                    tCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTTTgg                                                                                          >  2:679266/1‑149 (MQ=255)
                                                    tCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATgg                                                                                          <  1:1126092/149‑1 (MQ=255)
                                                        ttGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGATGAATCGTTTGAAATCATCGGAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATGTTAATATATATGGGTTg                                                                                      >  2:1673938/1‑149 (MQ=18)
                                                        ttGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTg                                                                                      >  1:1021972/1‑149 (MQ=255)
                                                        ttGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGAAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTG‑GAGTAAATTAATGG‑AGTATATTAATATTTATGGATTg                                                                                      >  2:1342784/1‑149 (MQ=255)
                                                        ttGAAATCATCGGAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAAGATTTATGGttgg                                                                                      >  1:29662/1‑147 (MQ=255)
                                                          gAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTgga                                                                                    >  2:447942/1‑149 (MQ=255)
                                                          gAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTgga                                                                                    >  1:1547693/1‑149 (MQ=255)
                                                           aaaTCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATGAATGG‑AGTGTCTTAATATTAACGGTTTggag                                                                                   >  2:1809660/1‑149 (MQ=18)
                                                               catcGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAAt                                                                               <  1:762780/149‑1 (MQ=255)
                                                                   gtagtc‑ATCGCGCCAATATCGCGTGAAATAATCAGGGGAGTCGTTTGAAATCATCGTAGTAATCGCGCGAAGATCGCGTGAAATTCTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCg                                                                           <  1:280816/149‑1 (MQ=25)
                                                                   gtagta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCg                                                                           <  1:1659827/149‑1 (MQ=255)
                                                                     agta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTACTGGTAATA‑TTTAATATTTATGGTTTGGAGGAATTGCGtt                                                                         <  1:1471929/149‑1 (MQ=21)
                                                                     agta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGtt                                                                         <  1:1208441/149‑1 (MQ=255)
                                                                     agta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTAGGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGtt                                                                         <  1:1297262/149‑1 (MQ=255)
                                                                     agta‑ATCGCGCGAAAATCGCGGGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGtt                                                                         <  1:793656/149‑1 (MQ=255)
                                                                       ta‑ATCGCGCGAAAATCGCGTGATATAATCAGAGGAAGCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑CGGAGCTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                       <  1:1985661/149‑1 (MQ=21)
                                                                       ta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                       >  1:628928/1‑149 (MQ=255)
                                                                       ta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                       >  2:906831/1‑149 (MQ=255)
                                                                       ta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                       >  2:657524/1‑149 (MQ=255)
                                                                       ta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                       >  2:351545/1‑149 (MQ=255)
                                                                       ta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTAGTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                       >  1:1236751/1‑149 (MQ=255)
                                                                        a‑aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCa                                                                      <  1:1942553/149‑1 (MQ=255)
                                                                        a‑aTCGCGCGAAAATCGCGTGAAATAAGCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTCTAATATTTATGGTTTGGAGGAATTGCGTTGCa                                                                      <  1:1272704/149‑1 (MQ=255)
                                                                          aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGCATTTTAATGTTTATGGTTTGGAGGAATTGCGTTGCAt                                                                     >  1:209407/1‑149 (MQ=255)
                                                                            cgcgtgAAAATCGCGGGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAAAAAGATGGTAGACGGCTC‑GAGTAAATTGATGG‑AGTATTTAAATCTTTATGGATTGGAGGAATTACggcgcaaag                                                                   >  2:843093/1‑141 (MQ=18)
                                                                            cgcgcgAAGATCGCGTGAAATAGTCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATag                                                                   <  1:982254/149‑1 (MQ=255)
                                                                            cgcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATag                                                                   >  1:48688/1‑149 (MQ=255)
                                                                            cgcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATaa                                                                   >  2:357538/1‑148 (MQ=255)
                                                                                 gAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaaa                                                              <  1:934620/149‑1 (MQ=255)
                                                                                 gAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaaa                                                              <  1:750753/149‑1 (MQ=255)
                                                                                 gAAAATCGCGGGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaaa                                                              <  1:241728/149‑1 (MQ=255)
                                                                                 gAAAATCGCCTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaaa                                                              <  1:110072/149‑1 (MQ=255)
                                                                                  aaactagacgaaaaGAAGCAAAGGAATCTGTTGATATTAGCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                             <  1:452991/138‑1 (MQ=37)
                                                                                  aaaaTCGCGTTAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                             <  1:1914786/149‑1 (MQ=255)
                                                                                  aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                             <  1:1242847/149‑1 (MQ=255)
                                                                                  aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                             >  1:870653/1‑149 (MQ=255)
                                                                                  aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTGGGAGGAATTGCGTTGCATGGAGaagg                                                             >  2:1596669/1‑147 (MQ=255)
                                                                                  aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATCTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                             <  1:970423/149‑1 (MQ=255)
                                                                                  aaaaTCGCGTGAAATAATCAGAGGAATCGCTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                             <  1:1914650/149‑1 (MQ=255)
                                                                                  aaaaTCGCGTGAAATAATCAGAGGAAGCGTTTGAAAGCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                             <  2:387905/149‑1 (MQ=255)
                                                                                  aaaaTCACGTGAAATAAACAGAGGAATAGTTTCAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                             <  2:1668037/149‑1 (MQ=255)
                                                                                   aactctcgTGAAATAATCAGAGGAATCTCTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGTAATTGCGTTGCATAGTGAAAGt                                                            <  2:1362060/143‑1 (MQ=37)
                                                                                    aaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTa                                                           <  1:1903414/149‑1 (MQ=255)
                                                                                       cgcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAat                                                        <  1:663912/149‑1 (MQ=255)
                                                                                              aataatCAGACGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAGCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATAGTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATaga                                                 <  1:694899/149‑1 (MQ=255)
                                                                                                  atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGtat                                             >  2:81959/1‑149 (MQ=255)
                                                                                                  atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGtat                                             >  1:1996260/1‑149 (MQ=255)
                                                                                                    cAGAGGAATCGTTTGAAATCATCGTAGTAACCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCATTGCATAGAGAAAGTAAATATATAGAGTATaa                                           <  1:1276286/149‑1 (MQ=255)
                                                                                                        ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGaaa                                       >  1:32623/1‑149 (MQ=255)
                                                                                                             cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACg                                  >  1:779459/1‑149 (MQ=255)
                                                                                                             cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTCTTGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACg                                  >  1:462518/1‑149 (MQ=255)
                                                                                                                ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAc                                                                                                                                            <  2:953063/42‑1 (MQ=32)
                                                                                                                ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAc                                                                                                                                            <  2:821835/42‑1 (MQ=32)
                                                                                                                ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAAGGG‑AGTAATTTAATATTTATGAGTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGGAATAGAAATCACGaaa                               >  2:1849974/1‑149 (MQ=38)
                                                                                                                 tGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGaaaa                              <  2:1136539/149‑1 (MQ=255)
                                                                                                                  gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAg                             >  1:1505732/1‑149 (MQ=255)
                                                                                                                  gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAg                             >  2:1804164/1‑149 (MQ=255)
                                                                                                                   aaaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAgg                            <  2:1123121/149‑1 (MQ=255)
                                                                                                                    aaTCATTGTAGTAATCGGGCGAAAATCGCGTGAACTACTATGGTCGGAGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa                           <  2:909024/149‑1 (MQ=255)
                                                                                                                    aaTCATCGTAGTAATCGCGCGAAAGTCGTGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa                           <  1:1139798/149‑1 (MQ=255)
                                                                                                                    aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa                           <  1:795857/149‑1 (MQ=255)
                                                                                                                     atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGAt                          <  1:854840/149‑1 (MQ=255)
                                                                                                                        atcGTAGTAATCGCGCGAAAATCGCGTGAAATACGATGGTCGTCGGTTTCGAG‑AGATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTAt                       <  1:942253/149‑1 (MQ=255)
                                                                                                                                aaTCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGat               <  2:48688/149‑1 (MQ=255)
                                                                                                                                       cgAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGt        <  2:496786/149‑1 (MQ=255)
                                                                                                                                           aaTCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTAc    <  1:719400/149‑1 (MQ=255)
                                                                                                                                            accgcgTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACg   <  2:1255961/147‑1 (MQ=255)
                                                                                                                                            aTCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACg   <  1:308242/149‑1 (MQ=255)
                                                                                                                                             tCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACGt  <  1:907018/149‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                                     
TTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACGT  >  CP000730/52847‑53135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.