Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,9180AG72.2% 1255.3 / inf 783intergenic (‑1001/‑167)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (78/138);  new base G (326/236);  total (409/374)
Fisher's exact test for biased strand distribution p-value = 4.50e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 783 total aligned reads displayed.

CAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTG  >  CP000730/1929774‑1930062
                                                                                                                                                     |                                                                                                                                                         
gaaatagatatgCTTGTATACTCACCGATGGTATAATAACAGATTCGCCTATCTCTCATGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCg                                                                                                                                                      <  2:57857/139‑1 (MQ=255)
cAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGc                                                                                                                                                       <  1:1737430/149‑1 (MQ=255)
 aagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                                                                                                                                                     <  1:1940018/140‑1 (MQ=255)
 aagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                                                                                                                                                     >  1:198596/10‑149 (MQ=255)
 aagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCCGTGCTGTTGcct                                                                                                                                                     >  2:289802/10‑147 (MQ=255)
 aagtagataagCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATATTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                                                                                                                                                     >  2:1155210/11‑149 (MQ=255)
 aaggagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                                                                                                                                                     <  2:772349/140‑1 (MQ=255)
  agtagatatgCTTGTATATTCACAGATGGTATAACAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGta                                                                                                                                                    <  2:260807/141‑2 (MQ=255)
   gtagatatgCTTGTATATTCNCNGATAGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                                                                                                                                                   <  1:1135194/142‑3 (MQ=255)
   gggACTGTGCTTGTATACTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGtt                                                                                                                                                    <  2:1337523/147‑1 (MQ=255)
       atatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGGGGCTGTGCTGTTGCGtattata                                                                                                                                               >  1:652121/4‑143 (MQ=255)
        tatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatac                                                                                                                                              <  2:1392491/147‑8 (MQ=255)
          tgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTTGACGCAGAGAGGAGGTGTT‑TCC‑G‑C‑CGCTCCTTATTATCG‑TCACGAGCATATCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTcg                                                                                                                                             <  2:501832/149‑2 (MQ=255)
           gCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatactta                                                                                                                                           <  1:1004008/149‑11 (MQ=255)
            cTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAt                                                                                                                                          >  1:1842132/1‑149 (MQ=255)
            cTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAt                                                                                                                                          >  1:1231270/1‑149 (MQ=255)
            cTTGTATATTCACAGAGGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GAAGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTGGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAt                                                                                                                                          >  2:1475721/1‑149 (MQ=255)
             ttGTATCTTCGCAGATGGTATAATAATAGAGTCGCCTATCGCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAtt                                                                                                                                         >  2:967659/1‑149 (MQ=255)
             ctGTATATTCACAGATTGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAtt                                                                                                                                         <  1:1492841/148‑1 (MQ=255)
              tgtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTg                                                                                                                                        >  2:1997595/13‑149 (MQ=255)
                tatatccacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                                      <  1:927666/139‑1 (MQ=255)
                tataTTCACAGATGGTATAATAATAGGGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCAGCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                                      <  2:1926700/149‑1 (MQ=255)
                tataTTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                                      <  1:1637308/149‑1 (MQ=255)
                 atatTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGc                                                                                                                                      <  1:1668185/149‑1 (MQ=255)
                   ttttGCCGATGATATAATACGAGAGTCGCCTCTCTCTCAGGCGCCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑GGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTa                                                                                                                                    <  2:693647/148‑1 (MQ=255)
                    ttcactgatggtATAATAATAATATCCCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAg                                                                                                                                  <  2:409447/143‑1 (MQ=255)
                     tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTAGCGTATTATACTTATTGGCTTAGt                                                                                                                                 >  2:1251407/6‑149 (MQ=255)
                     tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAAGT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                                 <  2:803593/144‑1 (MQ=255)
                      cacagatggtATAATAATAGAGGCGCCTATCGCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                                                                                <  2:1518509/145‑1 (MQ=255)
                       acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCCC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                                                                                               >  1:87657/4‑148 (MQ=255)
                        cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGCAGAGAGGAGGTGCATTAC‑A‑T‑TGCTAACCATTGTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                                                                                              <  1:77553/147‑3 (MQ=255)
                         agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAAc                                                                                                                             >  1:1316978/2‑149 (MQ=255)
                          gatgatATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGAc                                                                                                                             >  2:170445/1‑149 (MQ=255)
                           acgatATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACg                                                                                                                            <  2:615472/147‑1 (MQ=255)
                            tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                                                                          >  2:872562/4‑149 (MQ=255)
                            tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                                                                          <  2:1042196/146‑1 (MQ=255)
                            tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                                                                          <  1:1340433/146‑1 (MQ=255)
                            tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTCGTAAACGCa                                                                                                                          >  2:1367048/4‑149 (MQ=255)
                            tagtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCGAATCATGTCCGTTCAC‑TTCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATCATACTTATTGGCTTAGTAAACGCa                                                                                                                          <  1:988714/146‑1 (MQ=255)
                            gggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                                                                          <  2:348324/146‑1 (MQ=255)
                            gggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                                                                          <  2:728130/146‑1 (MQ=255)
                             ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑a                                                                                                                       <  1:1398355/147‑1 (MQ=255)
                              gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑ac                                                                                                                      >  1:1090730/2‑148 (MQ=255)
                              gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTAGTTCAC‑ATCATAGCACCAGTCATCAGTGGGTGTGCTGTTGCGTCTTATACTTATTGGGTTAGTAAACGCa‑‑aa                                                                                                                      >  1:1276366/2‑148 (MQ=255)
                                ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaa                                                                                                                    <  2:1543879/149‑4 (MQ=255)
                                ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaa                                                                                                                    <  1:748952/149‑4 (MQ=255)
                                 taataaTCGCGTCGCCTATCTCACAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑CTCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaa                                                                                                                   <  1:559604/149‑5 (MQ=255)
                                 taataaGAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAA‑T‑A‑CTGGGATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaa                                                                                                                   <  1:950476/149‑5 (MQ=255)
                                 taataGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑AGCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAc                                                                                                                    >  2:1491564/1‑149 (MQ=255)
                                 taagaatagAGTCGCCTATCGCTCAGGCGTCAATT‑‑GACGAAGGGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaa                                                                                                                   <  2:1903238/143‑5 (MQ=255)
                                 aaataataaggTCGCCTATCTCTCAGGGGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCTTTTTCGTTCAC‑ATCATAGAACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaa                                                                                                                   <  2:913108/139‑5 (MQ=255)
                                  aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTACACGCa‑‑acaaac                                                                                                                  >  2:380987/1‑144 (MQ=255)
                                  aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaat                                                                                                                  >  1:2162/1‑144 (MQ=255)
                                   ataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaata                                                                                                                 <  2:1132505/149‑7 (MQ=255)
                                    tagtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑aa‑‑a                                                                                                             <  1:630187/149‑1 (MQ=255)
                                     aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataat                                                                                                               >  1:1875390/3‑141 (MQ=255)
                                      gtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAG‑‑AA‑‑AAt                                                                                                           >  1:1550442/1‑149 (MQ=255)
                                      atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataatt                                                                                                              >  2:459779/2‑140 (MQ=255)
                                      atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataatt                                                                                                              >  2:1835406/2‑140 (MQ=255)
                                       tagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAg                                                                                                                               >  2:529364/1‑134 (MQ=255)
                                       tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataatta                                                                                                             >  2:1570445/1‑139 (MQ=255)
                                       tagAGTCGCCTATCTCTCAGGCGTCAAGT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataatta                                                                                                             >  1:1198743/1‑139 (MQ=255)
                                        agagTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAg                                                                                                         <  1:675325/149‑1 (MQ=255)
                                        agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaa                                                                                                            >  1:1021085/1‑138 (MQ=255)
                                         gagTCGCCTATCTTTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGATGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaat                                                                                                           <  2:1300502/149‑13 (MQ=255)
                                         gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTGGTAAACGCa‑‑acaaataattaaa                                                                                                           >  2:229851/1‑137 (MQ=255)
                                         gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaat                                                                                                           >  2:1778455/1‑137 (MQ=255)
                                         gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaat                                                                                                           >  2:1615853/1‑137 (MQ=255)
                                         gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaat                                                                                                           >  2:1861085/1‑137 (MQ=255)
                                         gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaat                                                                                                           >  2:1181947/1‑137 (MQ=255)
                                         gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaat                                                                                                           >  1:307524/1‑137 (MQ=255)
                                         gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGccacaaataattaat                                                                                                             >  1:180246/1‑135 (MQ=255)
                                         gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaat                                                                                                           >  1:290/1‑137 (MQ=255)
                                          agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaata                                                                                                          >  1:1043099/1‑136 (MQ=255)
                                          agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaata                                                                                                          >  2:84137/1‑136 (MQ=255)
                                          agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaata                                                                                                          >  1:709320/1‑136 (MQ=255)
                                          agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaata                                                                                                          >  1:838445/1‑136 (MQ=255)
                                           gTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTg                                                                                                      <  1:896826/149‑1 (MQ=255)
                                           gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaatag                                                                                                         >  1:577166/1‑135 (MQ=255)
                                           gTCGCCTATCTCTCAGGCGTCAATGTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTg                                                                                                      <  1:258630/149‑1 (MQ=255)
                                           gTCGCCTATCTCTCAGGCGTAAATT‑‑GCCGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa‑‑acaaataattaatag                                                                                                         <  1:1908544/149‑15 (MQ=255)
                                                   tctctcAAGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑Ag                                                                                            >  1:1461144/1‑149 (MQ=255)
                                                           gCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCGAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGGGAC‑ATAT‑AGCC‑GCACCa                                                                                   >  1:1517381/1‑149 (MQ=255)
                                                            ggTCAATTTAGACGCAGAGAGGAGTTGTA‑TAA‑G‑G‑TGATGCCTATTGTCGTTCAC‑ATCATAGCACCAGTCATCAGCGGCTGTGCCATTGTGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCaa                                                                                  <  1:497777/148‑1 (MQ=255)
                                                            cGTCAATTGAGACGCAGATAGGAGGTGTA‑TAA‑G‑G‑TTATTCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCTATTGCGTCTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCaa                                                                                  <  1:414785/149‑1 (MQ=255)
                                                                  tttAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCGGTGGCAGTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATaaaaa                                                                            >  1:1770838/1‑149 (MQ=255)
                                                                                ggaggTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCg                                                              >  2:1424351/1‑149 (MQ=255)
                                                                                ggaggTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCg                                                              <  1:1165489/149‑1 (MQ=255)
                                                                                ggaggTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCg                                                              <  1:1590388/149‑1 (MQ=255)
                                                                                ggaggTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCg                                                              <  2:1218581/149‑1 (MQ=255)
                                                                                              g‑g‑TGATTCTTAATTTCGTTCAC‑ATCATACCACCAGTCATCAGCGGCTGTGCCATTGCGTTTCTTTCTTATTGGCTAAGCACACCCA‑‑ATAC‑‑AA‑‑AAGAGGTGAC‑ATAT‑AGCC‑GCACCACTAAAACTCCCCTCACTACCGCAAATAGTGAgg                                                  <  1:37878/149‑1 (MQ=255)
                                                                                                        ttATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGgt                                          >  1:340288/1‑149 (MQ=255)
                                                                                                           ttttCGTTCAC‑ATCATAGCACCGGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGta                                       <  1:160513/149‑1 (MQ=255)
                                                                                                                    ac‑aTCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCAACAAAT‑‑AATTAATAGGCGACTTTATAAGCCAGCATCGA‑AAAAATCCCCACACTACTGC‑AATAGTGTGGGGATTGgtgcattaa                                   >  1:1707021/1‑143 (MQ=255)
                                                                                                                     c‑atcatAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATa                             >  2:1663074/1‑149 (MQ=255)
                                                                                                                       atcatAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATAc                            <  1:1424351/149‑1 (MQ=255)
                                                                                                                           tAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTAt                        >  2:1739671/1‑149 (MQ=255)
                                                                                                                             gCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAACCGCA‑‑ACACATAATTAATAGGCGACTTTATAAGCCAGCATCGA‑AAAAATCCCCACACTACTGC‑AATAGTGTGGGGATTGGTGcattaattgttaat                           >  2:669292/1‑138 (MQ=255)
                                                                                                                                       tcaGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCtt            <  2:1088921/149‑1 (MQ=255)
                                                                                                                                                 tgCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAC‑AGCC‑CCGCCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTg  <  1:464095/149‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                         
CAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAC‑ATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCA‑‑ATAC‑‑AA‑‑AATAGGTGAC‑ATAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTG  >  CP000730/1929774‑1930062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑