Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 638,614 G→T 100% T14K (ACA→AAA)  thiD ← phosphomethylpyrimidine kinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730638,6140GT100.0% 293.5 / ‑6.5 90T14K (ACA→AAA) thiDphosphomethylpyrimidine kinase
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base T (41/48);  total (41/49)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TCCATTGGTAATGGTGTAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTGTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGATTGTTGAAAT  >  CP000730/638479‑638750
                                                                                                                                       |                                                                                                                                         
tCCATTGGTAATGGGGTAACATCGTGTGAACATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCa                                                                                                                                      <  2:533655/141‑1 (MQ=255)
  caatGGTAATGGTGTAACATCGTGTGACCATGTATCTTTTTCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGa                                                                                                                                    <  1:158031/138‑1 (MQ=255)
    ttGGTAATGGTGTAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAAc                                                                                                                                  <  1:658995/141‑1 (MQ=255)
     tGGTAATGGTGTAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAAcc                                                                                                                                 <  2:420561/141‑1 (MQ=255)
      ggTAATGGTGTAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCg                                                                                                                                <  2:438595/141‑1 (MQ=255)
      ggTAATGGTGTAACATCGTCTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCg                                                                                                                                <  2:499324/141‑1 (MQ=255)
          aTGGTGTAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAACGCGACCCCTCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑aa                                                                                                                           <  1:564487/141‑1 (MQ=255)
          aTGGTGTAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑aa                                                                                                                           <  1:488752/141‑1 (MQ=255)
              tgtAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGt                                                                                                                       >  1:272451/1‑141 (MQ=255)
                tAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTa                                                                                                                     <  1:654127/141‑1 (MQ=255)
                 aaCATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTaa                                                                                                                    <  1:269383/141‑1 (MQ=255)
                    aTCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAAc                                                                                                                 <  2:46559/141‑1 (MQ=255)
                     tCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAAct                                                                                                                >  2:659651/1‑141 (MQ=255)
                     tCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAAct                                                                                                                >  2:298000/1‑141 (MQ=255)
                        tgtgACAATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAActttc                                                                                                             <  1:325577/141‑1 (MQ=255)
                         gtgATCATGTAGCTTTATCCATGGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAActttct                                                                                                            <  1:204627/141‑1 (MQ=255)
                          tgACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAActttctt                                                                                                           <  1:675823/141‑1 (MQ=255)
                           gACCATGTATCTTTATCCATAGCAACGATGGCAGTTAAAGCGCCCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAActttcttt                                                                                                          <  1:66855/141‑1 (MQ=255)
                            acaaTGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTa                                                                                                         <  2:157446/138‑1 (MQ=255)
                              cATGTATCTTTATCCATAGTAACGATGGCCGTTCAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCCCTTTTGTCAGACCCGCA‑AATTGTTAAACCTTACTTTaaa                                                                                                       >  1:555020/1‑141 (MQ=255)
                                 gTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCATAACCGGC‑CATTGTTAAAACTTTCTTTAAAGcc                                                                                                    >  2:426680/1‑141 (MQ=255)
                                        tATCCATAGTAACGATGGCAGTTAAAGCGCCCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTCAAAGCCATTTAGc                                                                                             <  2:282589/141‑1 (MQ=255)
                                         aTCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCt                                                                                            <  2:496093/141‑1 (MQ=255)
                                          tcgaTAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCtt                                                                                           <  1:706429/138‑1 (MQ=255)
                                          tCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGG‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCtt                                                                                           >  2:73753/1‑141 (MQ=255)
                                          tCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCtt                                                                                           >  1:752517/1‑141 (MQ=255)
                                            cATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCa                                                                                         <  1:718860/141‑1 (MQ=255)
                                            cATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCa                                                                                         >  1:676649/1‑141 (MQ=255)
                                                gTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTcc                                                                                     <  1:409509/141‑1 (MQ=255)
                                                 tAACGCTTGCAGTTAAAGCGAGCATGCCCTACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCt                                                                                    <  1:95523/141‑1 (MQ=255)
                                                 tAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCt                                                                                    <  2:522747/141‑1 (MQ=255)
                                                    cGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATATGCTTGCATACCTGCGCCAGCACTTTTATCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGATTCACTCCTACa                                                                                 >  1:90993/1‑141 (MQ=255)
                                                     gATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACat                                                                                <  2:2521/141‑1 (MQ=255)
                                                     gATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACat                                                                                <  1:622262/141‑1 (MQ=255)
                                                      aTGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACata                                                                               >  2:671706/1‑141 (MQ=255)
                                                      aTGGCAGTTAAAGCGACCATGCCATACGTATCTAATCCTTGGACCGCTTTAAAATCTGCTTGCATAAATGAGCCAGCAATATTGTGAGAACCGGCAAACTGTT‑AAACCTTCTTTAAAGCCTTTGAGCTTCACTCCTACata                                                                               >  2:449420/1‑141 (MQ=255)
                                                        ggCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACataat                                                                             >  2:276989/1‑141 (MQ=255)
                                                          cAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTGAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACataataa                                                                           >  1:42393/1‑141 (MQ=255)
                                                           atttAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACataataat                                                                          <  2:539618/139‑1 (MQ=255)
                                                              tAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACGCCTACATAATAATAtt                                                                       >  1:135910/1‑141 (MQ=255)
                                                              aaaaGCGACCATGCCATACGTAGCTAATGCTAGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATAtt                                                                       >  2:771100/2‑141 (MQ=255)
                                                               aacgCGACCACGCCATACGTATCTAATTTTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTg                                                                      <  2:203865/138‑1 (MQ=255)
                                                               aaaGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGACCCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTg                                                                      <  1:107423/141‑1 (MQ=255)
                                                                aaGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTTCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGACATTGAGCTTCACTCCTACATAATAATAtttt                                                                     >  2:372536/1‑139 (MQ=255)
                                                                aaGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGt                                                                     >  1:740766/1‑141 (MQ=255)
                                                                aaGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGGTAAAACTTTCTTTAAAGCCCTTGAGCTTCACTCCTCCCTAATAATATTGt                                                                     >  2:372477/1‑141 (MQ=255)
                                                                   cGACCATGCCATACGTATCTAATTCTGGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTAtt                                                                  <  1:15231/141‑1 (MQ=255)
                                                                      ccATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTGTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATtcat                                                               >  1:779583/1‑141 (MQ=255)
                                                                        ctGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATtcatca                                                             >  2:283053/2‑141 (MQ=255)
                                                                        aTGCCATACGTAGCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATtcatca                                                             >  2:283055/1‑141 (MQ=255)
                                                                          gCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATACTAATATTGTATTcatcatt                                                           >  1:576058/1‑140 (MQ=255)
                                                                           ccgtactgaTCTAATTCTGTGAAGGGTGTCACATCTGCTGGCATACCTGGGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAACCTTTCTTTAAAGTCCGTTAGCTTCACTCCTTCCTTATAATATTGTATtcattctat                                                          <  2:722826/133‑6 (MQ=255)
                                                                            cATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCatcatatc                                                         <  1:641124/141‑1 (MQ=255)
                                                                              tACGTATCTAAATCTTGGAACGTTTTCAAGTCCGCGTGGATACCTGCGCCAGTCCTTTTGTCAGAATCGGC‑AATTGTTAAAAAGTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCatcatatcat                                                       <  2:210145/141‑1 (MQ=255)
                                                                              tACCTATCCAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCatcatatcat                                                       <  1:357652/141‑1 (MQ=255)
                                                                               aCGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCAtt                                                      <  2:272451/141‑1 (MQ=255)
                                                                               aCGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCAtt                                                      >  1:7131/1‑141 (MQ=255)
                                                                               aCGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCAtt                                                      >  2:405895/1‑141 (MQ=255)
                                                                                cGTATCTAATTCTTGGGACGTTTTCAAATCTGCTTGCATCCCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAACACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCAttt                                                     <  2:112929/141‑1 (MQ=255)
                                                                                cGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTTCATACCTGCGCCAGCACTTTTGTCATAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATGGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCAttt                                                     >  1:67153/1‑141 (MQ=255)
                                                                                cGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCAttt                                                     <  1:670064/141‑1 (MQ=255)
                                                                                 gTATCTAATTCTTGTAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCAtttt                                                    <  2:343295/141‑1 (MQ=255)
                                                                                  tATCTTATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCAttttt                                                   <  2:515689/141‑1 (MQ=255)
                                                                                  tATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCAttttt                                                   <  2:134005/141‑1 (MQ=255)
                                                                                   aTCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTa                                                  >  2:724826/1‑141 (MQ=255)
                                                                                   aTCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATAAtttttt                                                  >  2:540752/1‑140 (MQ=255)
                                                                                    tCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTaa                                                 >  2:43610/1‑141 (MQ=255)
                                                                                      tAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAAcc                                               <  1:714602/141‑1 (MQ=255)
                                                                                           cTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑ATTTGTTAACACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTCAtt                                          >  2:287517/1‑141 (MQ=255)
                                                                                           cTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAAtt                                          <  1:276989/141‑1 (MQ=255)
                                                                                                aaCGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTGATTGaaaa                                     <  2:265551/141‑1 (MQ=255)
                                                                                                aaCGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTAATCATATCATTTTTAACCTAATTGaaaa                                     >  2:772108/1‑141 (MQ=255)
                                                                                                   gTTTTCGAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAata                                  >  2:650506/1‑141 (MQ=255)
                                                                                                   gTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTTTCAGAACCGGC‑TATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATGATATTTAACCTAATTGATCAata                                  >  1:138325/1‑141 (MQ=255)
                                                                                                   gTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCACTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATAATTTTTAACCTAATTGAAAtata                                  >  2:561193/1‑141 (MQ=255)
                                                                                                     tttCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATCTCATTTTTAACCTAATTGAAAAATAtt                                >  1:217172/1‑141 (MQ=255)
                                                                                                       tCAAATCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTaa                              >  2:342489/1‑141 (MQ=255)
                                                                                                          aaTCTGCTTGCATACCTGCCCCAGCACTTTTTTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCa                           <  2:604069/141‑1 (MQ=255)
                                                                                                            tCTGCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCAtt                         >  2:593796/1‑141 (MQ=255)
                                                                                                               gCTTGCATACCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATACTAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAATTATTAAGCATTcgt                      >  2:340422/1‑139 (MQ=255)
                                                                                                                       aCCTGCGCCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAATCTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTtgat              <  1:125226/141‑1 (MQ=255)
                                                                                                                            cgcCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGAttg         >  1:299668/1‑141 (MQ=255)
                                                                                                                             gcCAGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTCGATGAttgt        <  2:499435/141‑1 (MQ=255)
                                                                                                                               cAGCACTTTTGTCATACCCGTC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATATTATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGAttgttg      <  2:756163/141‑1 (MQ=255)
                                                                                                                               cAGCACTTTTGTCAGTACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGAttgttg      <  2:244493/141‑1 (MQ=255)
                                                                                                                                aGCACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCAATCCTACATAATAATATTGTTTTCTTCTTATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGATTGTTGa     >  1:609203/1‑141 (MQ=255)
                                                                                                                                  cACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGATTGTTGaaa   >  1:593145/1‑141 (MQ=255)
                                                                                                                                  cACTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATAATTCTTaaaa   >  2:623900/1‑141 (MQ=255)
                                                                                                                                  cACTTGTGTCAGAACCGGC‑AATTGGTAAAACTTGCTTTAACGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAAACTAAATGAAAAATATTAAGCATTCAATATTTGATGATTGTTGaaa   <  2:55007/141‑1 (MQ=255)
                                                                                                                                   aCTTTTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGATTGTTGAAAt  <  2:40812/141‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                         
TCCATTGGTAATGGTGTAACATCGTGTGACCATGTATCTTTATCCATAGTAACGATGGCAGTTAAAGCGACCATGCCATACGTATCTAATTCTTGGAACGTTTTCAAATCTGCTTGCATACCTGCGCCAGCACTTGTGTCAGAACCGGC‑AATTGTTAAAACTTTCTTTAAAGCCATTGAGCTTCACTCCTACATAATAATATTGTATTCATCATATCATTTTTAACCTAATTGAAAAATATTAAGCATTCAATATTTGATGATTGTTGAAAT  >  CP000730/638479‑638750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑