BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	52489 =	100 (0.930)	27 (0.280)	3/250	13.0	24.2%	intergenic (+99/‑574)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
*	?	CP000730	= 52983	80 (0.830)	27 (0.280)	3/250	13.0	24.2%	intergenic (+593/‑80)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 101 total aligned reads displayed.

GTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTT  >  CP000730/52349‑52629

gTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGa                                                                                                                                              <  1:133681/141‑1 (MQ=255)

gTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTGTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGa                                                                                                                                              <  2:891829/141‑1 (MQ=255)

gTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAAGAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGa                                                                                                                                              >  2:907892/1‑141 (MQ=255)

 tATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAGAAATGTTGTGGaa                                                                                                                                             >  1:1110205/1‑141 (MQ=255)

     gttgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAAtag                                                                                                                                         >  1:1141957/1‑139 (MQ=255)

       tgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgcg                                                                                                                                       <  2:537948/141‑1 (MQ=255)

       tgttTTTTAAAGCATTAGATGCATTAAAGAAATCGTTTTTCCATGAAACAGATCT‑TTGTCCTGATTAAAATTAATTAATATTAAGCCACGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgcg                                                                                                                                       <  2:849303/141‑1 (MQ=255)

            tttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAGATcgctgtaaa                                                                                                                                  >  2:840478/1‑135 (MQ=255)

             ttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaaaa                                                                                                                                 >  2:810860/1‑140 (MQ=255)

             ttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaat                                                                                                                                 >  2:1041070/1‑141 (MQ=255)

             ttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaat                                                                                                                                 >  2:588803/1‑141 (MQ=255)

              tAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaata                                                                                                                                >  1:1202415/1‑141 (MQ=255)

              tAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAAAGTTGTGGAGATCGCGTGAgatg                                                                                                                                >  1:112893/1‑140 (MQ=255)

              tAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAAAGAAGTCTTAAACGTTCTGAAAAACGAAAAATGTTGTGGAAATCGCGTGAaata                                                                                                                                >  2:85276/1‑141 (MQ=255)

                 aGCATTAGATGCCTTAAAGAAATAGTTTTCCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATc                                                                                                                             >  2:912365/1‑141 (MQ=255)

                  gCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCa                                                                                                                            >  2:1065395/1‑141 (MQ=255)

                  gCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCa                                                                                                                            >  2:458006/1‑141 (MQ=255)

                    aTTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCagg                                                                                                                          >  2:309385/1‑140 (MQ=255)

                     ttAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCagag                                                                                                                         <  2:1087813/141‑1 (MQ=255)

                          tGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATc                                                                                                                    >  2:339960/1‑141 (MQ=255)

                          tGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATAGAGTGAAGTAATCAGAGGAATc                                                                                                                    >  1:42344/1‑141 (MQ=255)

                          tGCCTTAAAGAAATAGATTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATAAGAGGAAtg                                                                                                                    >  1:594926/1‑140 (MQ=255)

                            ccTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGt                                                                                                                  <  2:652825/141‑1 (MQ=255)

                              ttAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGttt                                                                                                                <  1:274786/141‑1 (MQ=255)

                                aaaGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGa                                                                                                              >  2:1165063/1‑141 (MQ=255)

                                aaaGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGa                                                                                                              >  2:434516/1‑141 (MQ=255)

                                         ttttttCACTTAAA‑ATATTTATAGATATAATTAAAATTAATTAATCTTAAGTCAGGTTAATCTAGCTTTAATCGTTCTGATGTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGATGAAACGTTTGAAatcatcct                                                                                                     <  2:510801/140‑3 (MQ=37)

                                         atttttCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                                                                                     <  1:1044741/140‑1 (MQ=255)

                                          tttttCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgta                                                                                                    >  2:1134867/1‑141 (MQ=255)

                                            tttCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtagt                                                                                                  >  2:1157798/1‑141 (MQ=255)

                                            tttCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATAATCgtagt                                                                                                  >  2:736329/1‑141 (MQ=255)

                                            tttCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGATGTGGAAATCGCGTGAACTAATCAGAGGAATCGTTTGAAATCATCgtagt                                                                                                  >  2:380469/1‑141 (MQ=255)

                                             ttCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtagta                                                                                                 >  1:268628/1‑141 (MQ=255)

                                                aCTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTATTc                                                                                              <  2:204097/141‑1 (MQ=255)

                                                aCTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATc                                                                                              >  1:655051/1‑141 (MQ=255)

                                                   gAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                           <  1:912365/141‑1 (MQ=255)

                                                   gAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                           >  1:841195/1‑141 (MQ=255)

                                                   gAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                           >  1:447493/1‑141 (MQ=255)

                                                   gAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                           <  2:1114066/141‑1 (MQ=255)

                                                   gAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                           <  1:530455/141‑1 (MQ=255)

                                                   gAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                           >  1:1128821/1‑141 (MQ=255)

                                                   gAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGGGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                           <  1:451046/141‑1 (MQ=255)

                                                       attatTTATAGATATAATTAAAATTACATAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGCTATCGCGCGa                                                                                        <  1:883842/139‑1 (MQ=255)

                                                         tatTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaa                                                                                      <  2:116801/141‑1 (MQ=255)

                                                         tatTTAAAGATATAATTAAAATGAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaa                                                                                      <  1:426307/141‑1 (MQ=255)

                                                          atTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                                                                                     <  2:874756/141‑1 (MQ=255)

                                                          aaatataGACATAATTAAAATTAATTAATATTAAGCCAGGATCATGTAGTCGTAAAAGAACAAAAATAAGAAAAATGTTGGGGAAATCGCGTGAAATAATCACAGGAATCGTTTGAAATCATCGTAGTTATCGCGCAaaaa                                                                                     <  2:379538/138‑1 (MQ=21)

                                                            ttATAGTTATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                                                                                   <  2:81034/141‑1 (MQ=255)

                                                            ttATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                                                                                   <  2:916473/141‑1 (MQ=255)

                                                              ataGATATAATTAAAATTAATTAATATTAAGAAAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATAAGAGGAATCGTTTGAAAGCATCGTAGTAATCGCGCGAAAATCAc                                                                                 >  1:593569/1‑141 (MQ=255)

                                                              ataGATATAATTAAAATTAACTAATAATAAGCCAGGATAAGGTAATATTAATCGATCTGTAAAACAAAAAAAGGTGCGGGAAGCGCGTGCAATAATTAGAGGAATCGTTTGAAGTCTCCGTAGGAATCGCGCGAAAATAAc                                                                                 >  2:198491/1‑141 (MQ=255)

                                                                  atatAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa                                                                             <  2:305048/141‑1 (MQ=255)

                                                                  atatAATTAAAATTAAATAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa                                                                             <  1:534515/141‑1 (MQ=255)

                                                                    ataATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                                                                           <  1:981564/141‑1 (MQ=255)

                                                                     taATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaat                                                                          >  1:687269/1‑141 (MQ=255)

                                                                          aaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCa                                                                     >  1:1142107/1‑141 (MQ=255)

                                                                            aattaattAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTATTCGCGCGAAAATCACGTGAAATAATCaga                                                                   <  1:885533/141‑1 (MQ=255)

                                                                            aattaattAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga                                                                   <  1:175629/141‑1 (MQ=255)

                                                                            aataagttaatAATAAGCCCGGATAAGGTATTCGTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga                                                                   <  1:870094/135‑1 (MQ=21)

                                                                            aaataattaagATTAAGCCAGGATGATGGAGTCTTAATCGTTCGGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga                                                                   <  1:546034/138‑1 (MQ=25)

                                                                              ataattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAgg                                                                 <  2:742610/140‑1 (MQ=255)

                                                                                 attaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt                                                              <  1:998911/141‑1 (MQ=255)

                                                                                    aatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAACCAGAGGAATCgg                                                           >  1:1015631/1‑140 (MQ=255)

                                                                                       atTAAACCAGGTTAATGTAGTCTTAATCGTTCTGAAATACGTACGATGTTGTAGCAATCACCTAAAATAATCAGAGGACTCGTTTGAAATCATCGGAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg                                                        <  2:1159207/141‑1 (MQ=17)

                                                                                          aaGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTTTGGTAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaaa                                                     <  2:513415/141‑1 (MQ=255)

                                                                                           aggcaagATAATGTAGTATTAAACCTTAAGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAat                                                    <  1:31200/135‑1 (MQ=17)

                                                                                           aGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAat                                                    <  1:191272/141‑1 (MQ=255)

                                                                                           aGCCAAGATTATGTAGTCGTAATCGTTCTGAAATACGAAAAATGTTTTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAat                                                    <  2:739234/141‑1 (MQ=255)

                                                                                              cAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATAAGTGGAATCATTTGAAatcat                                                 >  1:749065/1‑141 (MQ=255)

                                                                                              cAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCAAGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatcat                                                 >  1:1132482/1‑141 (MQ=255)

                                                                                                  aTAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgta                                             >  1:163355/1‑141 (MQ=255)

                                                                                                   tAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                            >  1:724221/1‑141 (MQ=255)

                                                                                                   tAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                            >  2:666676/1‑141 (MQ=255)

                                                                                                   tAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGAGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                            >  1:177999/1‑141 (MQ=255)

                                                                                                        tAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATc                                       >  1:274511/1‑141 (MQ=255)

                                                                                                            cTTAATCGTACTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgc                                   <  1:1121268/141‑1 (MQ=255)

                                                                                                             ttAAACGTACTGAAATACGAAAAATGTGGTGAAAATCGGGTGAAATAATCAAGGGAAACGTTTGAAATCATCGGAGTAATCGTGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                  <  2:539960/141‑1 (MQ=14)

                                                                                                              tAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                 <  1:890275/141‑1 (MQ=255)

                                                                                                              tAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAA‑CCCGCGAAAATTCCGGGGAATAATCAGAGGAAACGGTTTGAATCAACGTAGGAATcgccggga                                >  2:290247/1‑136 (MQ=17)

                                                                                                              tAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGT‑ATCGCGCGAAAATCACGGGAAATAATCAGAGGAATAGTTTGGAATCATCGTAGTAATCGCGGGaa                                >  2:290507/1‑141 (MQ=18)

                                                                                                               aaTCTTTCTGAAATACGAAAAATTTTTTAGAAATCGCGTGAAATAATCAGCGGAATCGTTTGAAATAATCGGAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaa                                <  2:822620/141‑1 (MQ=14)

                                                                                                                   gTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                            >  1:606754/1‑141 (MQ=255)

                                                                                                                         aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTACTCGCGCGAAAATCACGTGa                      >  1:684247/1‑141 (MQ=255)

                                                                                                                         aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa                      >  1:846863/1‑141 (MQ=255)

                                                                                                                         aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa                      >  2:738842/1‑141 (MQ=255)

                                                                                                                         aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa                      >  1:1212525/1‑141 (MQ=255)

                                                                                                                         aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAGCGTTTGAAATCATCGTAGTAATCGCGCGAAACTCACGGGa                      >  1:730158/1‑141 (MQ=255)

                                                                                                                         aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAACGTTTGAAATCAGCGTAGTAATCGCGCGAAAATCACGTGa                      >  2:52572/1‑141 (MQ=255)

                                                                                                                           aTACGAAAAATGTTGCGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                    >  1:894893/1‑141 (MQ=255)

                                                                                                                            tACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaat                   >  1:779320/1‑141 (MQ=255)

                                                                                                                             aCGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaata                  >  1:1073781/1‑141 (MQ=255)

                                                                                                                             aCGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaata                  >  2:116518/1‑141 (MQ=255)

                                                                                                                             aCGAAAAATGTTGTGGAAATAGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGACTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaata                  >  1:846283/1‑141 (MQ=255)

                                                                                                                                      gttgtAGAAATCTCGTGTAATAATCAGCGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGa         <  1:617718/141‑1 (MQ=255)

                                                                                                                                       ttgtGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCCGAGGaa        >  1:49218/1‑141 (MQ=38)

                                                                                                                                        tgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaaa                                                     >  2:239633/1‑95 (MQ=39)

                                                                                                                                         gtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaa                                                                                      >  1:701822/1‑61 (MQ=37)

                                                                                                                                          tgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                                                                        >  2:271508/1‑58 (MQ=35)

                                                                                                                                          cggAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                                                                        <  1:271508/57‑1 (MQ=18)

                                                                                                                                             aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt  <  1:666676/141‑1 (MQ=32)

GTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAA‑ATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTT  >  CP000730/52349‑52629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.