New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2440052	35 (1.020)	5 (0.160)	5/252	4.2	12.7%	intergenic (+13/+53)	USA300HOU_2302/glvC	hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC
	?	CP000730	= 2440086	37 (1.180)					intergenic (+47/+19)	USA300HOU_2302/glvC	hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCA  >  CP000730/2439954‑2440223                                                                                                                                     |                                                                                                                                           tGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTc                                                                                                                                    >  1:89142/1‑141 (MQ=255)     aCATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCtttt                                                                                                                                <  1:276617/141‑1 (MQ=255)     aCATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCtttt                                                                                                                                >  2:47738/1‑141 (MQ=255)            aTTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtat                                                                                                                         <  1:11165/141‑1 (MQ=255)              tGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtatta                                                                                                                       <  1:72563/141‑1 (MQ=255)                 aaCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAtta‑ttt                                                                                                                   >  2:226276/1‑141 (MQ=255)                         atatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGAtgtg                                                                                                                                      >  1:226009/1‑115 (MQ=255)                         atatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGAtgtg                                                                                                                                      <  2:226009/115‑1 (MQ=255)                                     tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCt                                                                                               <  1:271965/141‑1 (MQ=255)                                       tCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCa                                                                                             >  1:35648/1‑141 (MQ=255)                                              aTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCAttt                                                                                      <  1:280014/141‑1 (MQ=255)                                              aTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCAttt                                                                                      >  1:129922/1‑141 (MQ=255)                                               ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTg                                                                                     <  2:121727/141‑1 (MQ=255)                                                           aTCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTc                                                                         >  1:5479/1‑141 (MQ=255)                                                             cTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCAc                                                                       <  1:180411/141‑1 (MQ=255)                                                             cTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCAc                                                                       <  2:361720/141‑1 (MQ=255)                                                                  aGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACt                                                                  <  1:310145/141‑1 (MQ=255)                                                                          tCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTAc                                                          >  2:138729/1‑141 (MQ=255)                                                                          tCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTAc                                                          <  2:279273/141‑1 (MQ=255)                                                                            gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTg                                                        >  1:19217/1‑141 (MQ=255)                                                                             tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTg                                                        <  2:78750/141‑1 (MQ=255)                                                                              atatCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTTTTTTT‑TTTTTCTTCGGACGATTGATCTTCAACCATTTGTTCTAATGCTTCACGAACTTGTGGTACTGTc                                                      >  2:136717/1‑141 (MQ=255)                                                                              atatCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATTCTTCACTAACTTGTGGTACTGTc                                                      >  2:258515/1‑141 (MQ=255)                                                                                  cATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAc                                                  <  2:240075/141‑1 (MQ=255)                                                                                   ataataAAAGACACATCTATACGATGATCATTTACAATGATTGCGTACAGTGCTGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAcc                                                 <  1:314107/141‑1 (MQ=255)                                                                                    taataaAAGACACATCTATACGATGATCATTTATAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACct                                                <  2:280691/141‑1 (MQ=255)                                                                                       taaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctact                                             <  2:120738/141‑1 (MQ=255)                                                                                          aaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTTTTTTT‑TTTATCTTCGGACGATTGATCCTCAACCATTTTTTCTAATGCTTCACGAACTTGTTGTACTCTCCTACCTCCTACa                                          >  2:251607/1‑141 (MQ=255)                                                                                          aaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCt                                                                                               <  2:33416/88‑1 (MQ=255)                                                                                          aaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCt                                                                                               >  1:33416/1‑88 (MQ=255)                                                                                                 aTCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTTTTTTT‑TTTTTCTTCGGACGATTGATCCTCAACCATTTGTTCATTTGTTTTACGAACTTTTGGTACTGTCCTACCTACTATAATTTGGa                                   >  2:319950/1‑141 (MQ=255)                                                                                                        cGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCtt                            <  2:242581/141‑1 (MQ=255)                                                                                                          atgatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTTTATTT‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTAc                          >  2:170963/1‑141 (MQ=255)                                                                                                              tcattgtaaaTGATTGCGTATAGTGATGTGTCTTTTTTTTTTTTT‑TTTTTATTCGTACGATTGATACTTAACCTTTTGTTTTTTTGCTTGTCGAACTTGTGGTTCTGTTCTACCTCTTAACGCATGGATACTCTTACCAct                      >  2:339662/9‑141 (MQ=255)                                                                                                               cATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCAcgt                     >  1:276220/1‑139 (MQ=255)                                                                                                                  ttACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCttt                  >  2:347291/1‑141 (MQ=255)                                                                                                                     cAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACt               <  2:190448/141‑1 (MQ=255)                                                                                                                          aTTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATcc          >  1:206556/1‑141 (MQ=255)                                                                                                                          aTTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATcc          >  1:165723/1‑141 (MQ=255)                                                                                                                               gTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGtgtg     <  1:52255/141‑1 (MQ=255)                                                                                                                               gTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGtgtg     <  1:36791/141‑1 (MQ=255)                                                                                                                                  taGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCa  <  2:116725/141‑1 (MQ=255)                                                                                                                                     |                                                                                                                                           TGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCA  >  CP000730/2439954‑2440223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.