BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 848580	138 (1.090)	8 (0.070) +CTGAAAAAAAAAA	7/270	5.5	5.4%	coding (101/312 nt)	USA300HOU_0793	hypothetical protein
*	?	CP000730	2866847 =	167 (1.320)	8 (0.070) +CTGAAAAAAAAAA	7/270	5.5	5.4%	intergenic (‑246/+207)	USA300HOU_2711/noc	hypothetical membrane protein/possible transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 168 total aligned reads displayed.

TCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCT  >  CP000730/2866701‑2866995

tCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGaaa                                                                                                                                                    >  2:360112/1‑149 (MQ=255)

     aaGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGc                                                                                                                                               <  1:609816/149‑1 (MQ=255)

     aaGCTTTCATGAGACTTTCATAAACTAGCAATAAAGGGTGCAAATGAAAGTATATCCAGCGCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGc                                                                                                                                               <  2:466704/149‑1 (MQ=255)

     aaGCTTTCAGGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGc                                                                                                                                               <  2:176635/149‑1 (MQ=255)

         tttCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGt                                                                                                                                           <  1:1324767/149‑1 (MQ=255)

                       cATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtttt                                                                                                                             <  1:97695/149‑1 (MQ=255)

                         tAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGAGCAttttac                                                                                                                           >  1:99833/1‑147 (MQ=255)

                          aaaCTAGCTATACAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                                                                                                          <  1:687263/149‑1 (MQ=255)

                          aaaCTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                                                                                                          <  1:900516/149‑1 (MQ=255)

                          aaaCTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt                                                                                                                          <  2:1197838/149‑1 (MQ=255)

                           aaCTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGtt                                                                                                                         >  1:218447/1‑149 (MQ=255)

                              tAGCGATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTGTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAg                                                                                                                      <  2:584143/149‑1 (MQ=255)

                                gCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc                                                                                                                    >  1:198459/1‑149 (MQ=255)

                                gCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTAGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAACCTTGTTACAAGCGCATTTTCGTTCAGTc                                                                                                                    >  1:807498/1‑149 (MQ=255)

                                 cAATAAAGGGTTCAAATGAAAGTATATCAAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCa                                                                                                                   <  1:934565/149‑1 (MQ=255)

                                  aaTAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCaa                                                                                                                  >  2:637947/1‑149 (MQ=255)

                                  aaTAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCaa                                                                                                                  >  1:1261877/1‑149 (MQ=255)

                                     aaaGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAacta                                                                                                               >  2:182219/1‑149 (MQ=255)

                                      aaGGGTTTAAAGGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactac                                                                                                              >  2:14166/1‑149 (MQ=255)

                                      aaGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactac                                                                                                              >  2:807307/1‑149 (MQ=255)

                                      aaGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAAGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactac                                                                                                              >  2:767817/1‑149 (MQ=255)

                                      aaGGGTTCAAATGAAAGTATATCCAGCCCAACTTAGGAAGAGAAAATTAACTGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactac                                                                                                              <  1:436956/149‑1 (MQ=17)

                                      aaGGGTTCAAATGAAAGTATATCCAGATCAAAGGTGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactac                                                                                                              >  2:953883/1‑149 (MQ=255)

                                       aGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactact                                                                                                             >  2:1094388/1‑149 (MQ=255)

                                       aGGGTTCAAATGAAAGTATACACCGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactact                                                                                                             >  2:1156624/1‑149 (MQ=255)

                                          gTTCAAGTGAAAGGATATCCAGCTCAAATGAGGGGGTGGGACAGAAATGGTATTTTCGCAAAATTTA‑TTTCGTCGTTCCACCGCAGCTAGGTTGAAAAGAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGcc                                                                                                          <  2:829588/149‑1 (MQ=17)

                                          gTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAGAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGcc                                                                                                          >  1:1085307/1‑149 (MQ=255)

                                          gTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGcc                                                                                                          <  2:271264/149‑1 (MQ=255)

                                           ttCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCa                                                                                                         <  1:1073282/149‑1 (MQ=255)

                                             cAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat                                                                                                       <  2:889562/149‑1 (MQ=255)

                                             cAAATGAAAGTATATCCAGCTCAAAGTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat                                                                                                       <  2:251811/149‑1 (MQ=255)

                                              aaaTGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAata                                                                                                      >  2:451311/1‑149 (MQ=255)

                                              aaaCGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGACAata                                                                                                      <  2:496995/149‑1 (MQ=255)

                                                aTGAAAGTATATTCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAAtata                                                                                                    <  1:1175722/149‑1 (MQ=255)

                                                    aaGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACtt                                                                                                >  1:1113653/1‑149 (MQ=255)

                                                      tttgatCCAGCTTAAATTAAGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGCATTGCAAAAAGCTTGTTACAAGAGCATTTTCGTTCAGTCAACTACTGCGAATATAACTTCg                                                                                              <  2:817585/145‑1 (MQ=17)

                                                      atataCCCACCTCAAATTAGGAAGTGGAACAGAAATCATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACCAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCg                                                                                              <  2:1221299/148‑1 (MQ=14)

                                                           tCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTTGATAAATTCA‑TTGCGGCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATACAACTTCGTagag                                                                                         <  2:607386/149‑1 (MQ=17)

                                                           tCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTagag                                                                                         <  1:583540/149‑1 (MQ=255)

                                                           tCCAGCCCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTagag                                                                                         <  2:1255043/149‑1 (MQ=255)

                                                             cAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGct                                                                                       >  1:482789/1‑148 (MQ=255)

                                                              aGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCAt                                                                                      >  2:69624/1‑149 (MQ=255)

                                                                cTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGGAAAGTTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAg                                                                                    >  1:851009/1‑149 (MQ=255)

                                                                cTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTTCCAATATAACTTCGTAGAGCATAg                                                                                    >  1:71795/1‑149 (MQ=255)

                                                                 tCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGa                                                                                   <  2:9841/149‑1 (MQ=255)

                                                                 tCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGa                                                                                   <  1:487047/149‑1 (MQ=255)

                                                                 ccAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGa                                                                                   <  2:407506/148‑1 (MQ=255)

                                                                  cAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGaa                                                                                  <  2:596298/149‑1 (MQ=255)

                                                                  cAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGaa                                                                                  <  2:45054/149‑1 (MQ=255)

                                                                    aaTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAGTTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa                                                                                >  1:868397/1‑149 (MQ=255)

                                                                    aaTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa                                                                                <  1:659352/149‑1 (MQ=255)

                                                                    aaTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa                                                                                <  1:774619/149‑1 (MQ=255)

                                                                    aaTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACACCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa                                                                                >  2:866587/1‑149 (MQ=255)

                                                                     aTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACAt                                                                               <  1:705513/149‑1 (MQ=255)

                                                                     aTTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACAt                                                                               <  1:782533/149‑1 (MQ=255)

                                                                        aGGTAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGa                                                                            <  2:1337687/149‑1 (MQ=255)

                                                                        aGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGa                                                                            <  1:1227465/149‑1 (MQ=255)

                                                                         gggAGTGGGACAGAAAGGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAt                                                                           <  2:541140/149‑1 (MQ=255)

                                                                          ggAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAtt                                                                          <  1:1221427/149‑1 (MQ=255)

                                                                          ggAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAtt                                                                          >  1:1011120/1‑149 (MQ=255)

                                                                           gAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAttt                                                                         >  2:1101693/1‑149 (MQ=255)

                                                                            aGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTa                                                                        <  2:1210577/149‑1 (MQ=255)

                                                                                      aaaTGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAATGGTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGcc                                                              <  1:368238/149‑1 (MQ=255)

                                                                                       aaTGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAGTTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATTACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCt                                                             >  2:534424/1‑149 (MQ=255)

                                                                                       aaTGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTATAGCATAGAACATTTATTTATGTACCAGCCt                                                             >  1:433768/1‑149 (MQ=255)

                                                                                         tGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGa                                                           <  1:746009/149‑1 (MQ=255)

                                                                                          ggaattctagCAAAATTTA‑GTTCGTTGTCCTGCCGCAGCAAGGTTAAAAAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGAt                                                          <  2:135421/140‑1 (MQ=14)

                                                                                            tatTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCa                                                        <  2:1034639/149‑1 (MQ=255)

                                                                                            tatTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCa                                                        <  2:825495/149‑1 (MQ=255)

                                                                                            tatTTTCGCAAAATTTA‑TTTCGTAGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAATAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATATAACATTGATTTACGTACCAGCCTGATCa                                                        <  1:847367/149‑1 (MQ=255)

                                                                                             atTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCaa                                                       <  2:1120170/149‑1 (MQ=255)

                                                                                             atTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCaa                                                       <  2:22399/149‑1 (MQ=255)

                                                                                             acttgcggaaaaTTTG‑TTTCGTCCTCCCAGTCCAGCAAGGTTGACTAGAATTGAAAAAAGCTCGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAAGATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCaa                                                       <  2:850561/141‑1 (MQ=17)

                                                                                              ttttgcgtaaaTTTATTTTCGTGGTCCCCCCCCAGCAAGGTTGAATAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCTTTCAGTCAACTACTGCCAAGATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCaa                                                       <  2:1338806/141‑1 (MQ=17)

                                                                                               tttCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACa                                                     <  2:1057701/149‑1 (MQ=255)

                                                                                               tttCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACa                                                     <  2:905817/149‑1 (MQ=255)

                                                                                               tttCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACa                                                     <  2:894080/149‑1 (MQ=255)

                                                                                               ctacGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTAAAAAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACa                                                     <  2:162431/146‑1 (MQ=17)

                                                                                                 tCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACata                                                   <  1:1150699/149‑1 (MQ=255)

                                                                                                    cAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATTTACCAGCCTGATCAACatataa                                                >  1:64923/1‑149 (MQ=255)

                                                                                                    cAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACCTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataa                                                <  2:672753/149‑1 (MQ=255)

                                                                                                             atctccaagtcCCACCCCAGCACGGTGTACTAGAAGTGAAAAAAGCGTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCTTGATCAACATataaatataaat                                        <  2:921689/141‑1 (MQ=17)

                                                                                                                 cgtcgtCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAttttt                                    >  2:411418/1‑149 (MQ=255)

                                                                                                                       cccACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGttt                              >  2:1332205/1‑149 (MQ=255)

                                                                                                                         cACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCa                            <  1:953883/149‑1 (MQ=255)

                                                                                                                           ccccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACg                          >  2:782437/1‑149 (MQ=255)

                                                                                                                           ccccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACg                          >  2:1254362/1‑149 (MQ=255)

                                                                                                                           ccccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACg                          <  2:406189/149‑1 (MQ=255)

                                                                                                                           ccccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTGCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACg                          >  1:184357/1‑149 (MQ=255)

                                                                                                                           ccccAGCAAGGTTGACTAGAAGTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACg                          <  2:766697/149‑1 (MQ=255)

                                                                                                                            cccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGt                         >  1:1173172/1‑149 (MQ=255)

                                                                                                                             ccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTa                        >  1:1298191/1‑149 (MQ=255)

                                                                                                                                  aaGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATCTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAACCa                   <  2:682556/149‑1 (MQ=255)

                                                                                                                                     gTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACaaaa                <  1:662446/149‑1 (MQ=255)

                                                                                                                                     gTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACaaaa                <  1:360112/149‑1 (MQ=255)

                                                                                                                                      ttGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACaaaaa               >  1:162254/1‑149 (MQ=255)

                                                                                                                                         aCTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACaaaaaaaa            <  1:119284/149‑1 (MQ=255)

                                                                                                                                            aGAATTGAAAAAAGCTTGTTACCAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGa         >  2:918769/1‑149 (MQ=255)

                                                                                                                                            aGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACaaaaaaaaggg         >  1:1022031/1‑146 (MQ=255)

                                                                                                                                                   aaaaaaTCTTGTTACAAGCGCATTTTCGTTCAGTCACCTACTGCCAATATAACTTCGTAGAGCATAGAACATTGACTTATGTACTAGCCGGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCt  <  1:40935/149‑1 (MQ=21)

TCATAAAGCTTTCATGATACTTTCATAAACTAGCAATAAAGGGTTCAAATGAAAGTATATCCAGCTCAAATTAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTA‑TTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCT  >  CP000730/2866701‑2866995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.