| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 36142 = | 1549 (16.300) | 7 (0.080) | 7/274 | 8.9 | 0.88% | coding (410/675 nt) | tpn | IS431mec transposase |
| ? | CP000730 | = 76626 | 93 (1.020) | intergenic (+684/‑450) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGAGCTATTTATATCGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/36295‑36142‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accttcGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATATCCCTCTGCATCAATGGCACGATA < CP000730/76626‑76481 ggcGCTATTTTTATCGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCA < 2:301251/146‑1GGAGCTATTTATATCGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCA > 2:753399/1‑149GGAGCTATTTATATCGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATAAAAC‑TCTATATGA‑AACAATTTGGAAAGCCTCTAAAGGTAATTTCAGATCAAGCA > 2:824890/1‑149GGAGCTATTTATATCGTGCCATTGATACCGAGGGACATACATTAGATATTTGCTTGCGTACGCAACCAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATATGGTAAGTCTCAAAAGGTAGTTACAGATCAAGCA > 2:568480/1‑149GGAGCTATTTATATCGTGCCATTGATACAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑AATTACATCAAGGT‑GTAAACCTCAAAAGGTAATTACAGATCAGGCA > 2:483985/1‑149 GAGCTATTTATATCGTGCCATTGATGCAGAGGGACATACCTTAGATATCTGGTTGCGTAAGCAACGAGATAATCCTTCAGCATATGCGTTTACCAAACGGCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCAC > 2:690184/1‑149 GAGCTATTTATATCGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAAACTCAAAAGGTAATTACAGATCAAGCAC > 2:210080/1‑149 GAGCTATTTATATCGTGCCATTGATACAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCAC > 2:8977/1‑149 GAGCTATTTATATCGTGCCATTGATACAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCAC > 2:760994/1‑149 gGCTATTTATGTCGTGCCGTTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGAACCAAATTCAGCATATGAACTTACCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACC < 2:219536/148‑1 atCTATTTATATCGTGCCATTGATACAGAGGGACCTACATTAGATATTTGGTTGGATAATCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACC < 2:442777/147‑1 AGCTATTTATATCGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACC < 2:419287/149‑1 AGCTATTTATATCGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACC > 2:149063/1‑149 AGCTATTTATATCGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGAACAGGCACC > 2:359447/1‑149 AGCTATTTATATCGTGCCATTGATACAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAAACTCAAAAGGTAATACCAGATCAGGCACC > 2:862938/1‑149 accagTTATATCGTGCCATTGATGCAAAGGGGCATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCT < 2:88396/144‑1 GCTATTTATATCGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCT > 2:848920/1‑149 GCTATTTATATCGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCCTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCT < 2:524018/149‑1 GCTATTTATATCGTGCCATTGATACAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCT > 2:864141/1‑149 GCTATTTATATCGTGCCATTGATACAGAGGGACATAAATTAGATATTGAGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCT < 2:172762/149‑1 CTATTCATATCGTCCCATTGATCCAGAGGGAAATACATTAGATATTTGGTAGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTT < 2:779089/149‑1 TATTTATATCGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTC > 2:503176/1‑149 TATATCGTGCCATTGATACAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAGCCTCAAAAGGTAGTTACAGATCAGGCAC < 1:1173882/141‑1 TATATCGTGCCATTGATACAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCAC < 1:943913/141‑1 TATATCGTGCCATTGATACAGAGGGACATACATTAGATAGTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAGCCTCAAAAGGCATTTACAGATCAGCCAC > 1:185816/1‑141 TATATCGTACCATTGATACAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATTCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAGCCTCAAAAGGTATTTACAGATCAGCCAC > 1:405788/1‑141 atacgtTGCCAATGATACAGGGCGACATCCATTGGCTATTTGGTGGCGAAAGCAACGAGATAATCATTCAGCATAGTCGTTTATCAAACGACT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACC < 1:311708/135‑1 ATATCGTGGCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACC < 1:934589/141‑1 ATATCGTGGCATGGAGGCAGAAGGAGATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACC < 1:29684/141‑1 ATAGCGTGCCCTTGATCAAGCGGGACATACATTACATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGAATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACC < 1:204721/141‑1 cATCGTCCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCCTAAGCAACGAGATAATCAGTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCGAAAAAGAGAATGACAGATCAGGCACCT < 1:257657/140‑1 TATTGTGCCATTGATACTGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTCTCAAACGTCT‑CATTA‑AACAATTTGGTAAGCCTCAAAAGGTAGTTACAGATCAGGCACCT < 1:800740/141‑1 TATCGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCT < 1:1172626/141‑1 TATCGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCT > 1:685030/1‑141 TATCGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCT > 1:277082/1‑141 ATCGTGCCATTGATACAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAGCCTCAAAAGGTAGTTACAGATCAGGCACCTT < 1:1132951/141‑1 tgGTGCCATGGATGGCGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTC < 1:557995/139‑1 TCGTGCCATTGATACAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTC > 1:1063430/1‑141 CGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATATAGTAAATCTAAAAAGGTAATTACAAATCAGGCACCTTCacagaagga > 2:304111/1‑140 GTGCCATGGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTCGT < 1:695318/141‑1 gGCCAATGATACAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTCGTTGAAGGTGC < 2:76649/148‑1 TGCCATTGATACAGAGGGACATACATTAGATATTTGGTTGCGTAACCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTCGTT < 1:161154/141‑1 GCCATTGATACAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCA‑CATTA‑AACAATTTGGTAAGCCTCAAAAGGTAGTTACAGATCAGGCGCCTTacaagcaggcaga > 2:910433/1‑136 GCCAGTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATCATCATTCAGCATATGCGTTTATTAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTCGTTG < 1:457830/141‑1 CCATTGATACAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTCGTTGAAGGTGCCT < 2:107435/149‑1 tcGATGCAGAGGGACATACATTAGATATTTGGTTGCGGAAGCAACGAGGTAATCATACAGCATATGCGTTTATCAAACGTCT‑CATGA‑AACAATTTGGTAAAACTCAAAAGGTAGTTACAGGTCAGGCACagtcaacgcacg > 1:791347/3‑129 TAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTT > 1:851049/1‑111 atcacCGAGACAATCAGTCAGCAAATGCGCTTATCAAACGCCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTG < 1:828800/136‑1 CAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAGCCTCAAAAGGTAGTTACAGATCAGGCACCTTCGTTGAAGGTGCCTGATCTGTAACTACCTTTTGAGGCTTACCAAATTGTT < 1:1106160/141‑1 tagCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTAGTTGTTTACGCAACCAAATATCTAATGCATTTGCATCTCCATC > 1:186511/4‑141 ACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCCAATGTATCTCCCTCTCCATCA > 1:160543/1‑141 CCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATATCCCTCTGCATCAATGGCACGA < 2:225814/149‑1 CCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTGGAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGTTTATCTCGTTGCTTACGCAACCAAATATCTAATGAATATtcactcgattcaa > 1:52728/1‑128 CTTCGTTGAAGGTGCCTGATCTGTAACTACCTTTTGAGGCTTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATATCCCTCTGTATCAATGGCACGAT > 2:40995/1‑149 TTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATATCCCTCTGCATCAATGGCACGATA < 2:3071/149‑1 GGAGCTATTTATATCGTGCCATTGATGCAGAGGGACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATCAAACGTCT‑CATTA‑AACAATTTGGTAAACCTCAAAAGGTAATTACAGATCAGGCACCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/36295‑36142‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accttcGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATATCCCTCTGCATCAATGGCACGATA < CP000730/76626‑76481 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |