New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2085296 =	77 (0.810)	11 (0.130)	10/258	7.1	12.8%	intergenic (‑558/‑400)	mapW2/USA300HOU_1944	cell surface protein MapW2/hypothetical protein
	?	CP000730	= 2128343	80 (0.930)					intergenic (+57/+1062)	int/hlgB	bacteriophage integrase/possible leukocidin subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTCACTAAAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTAAATT  >  CP000730/2085149‑2085439                                                                                                                                                     |                                                                                                                                                aTTCACTAAAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTg                                                                                                                                                <  2:831242/149‑1 (MQ=255)      cTAAAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATcc                                                                                                                                           >  2:892190/1‑149 (MQ=255)      cTAAAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATcc                                                                                                                                           >  2:577450/1‑149 (MQ=255)         aaaaaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCaaa                                                                                                                                        <  2:300073/149‑1 (MQ=255)         aaaaaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACATTTATAT‑GTTCTCGACCGttttt                                                                                                                                                >  1:1061211/1‑140 (MQ=255)          aaaaaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAAc                                                                                                                                       <  2:274204/149‑1 (MQ=255)             aaGTTGCATCACTTGCATTAGCAAATTGATGATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATc                                                                                                                                            <  1:153616/141‑1 (MQ=255)             aaGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATc                                                                                                                                            >  1:114162/1‑141 (MQ=255)                ttGCAACATTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCaa                                                                                                                                         <  1:1086213/141‑1 (MQ=255)                ttGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCaa                                                                                                                                         <  1:828559/141‑1 (MQ=255)                  gCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACt                                                                                                                               <  2:393679/149‑1 (MQ=255)                   cAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACtt                                                                                                                              >  2:417896/1‑149 (MQ=255)                    aaccattGCGTTTGCAATTTTATTATTAGTTGGTGCACTTTCTGACGATAGTGCCAAAGTCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTg                                                                                                                                     <  1:393653/136‑1 (MQ=255)                     acacCTGCATTAGCAAATGTATTATTAGTTGTTGCACTTACTTACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACtttt                                                                                                                            <  2:483073/149‑1 (MQ=255)                      cacTTGGATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTCAGTCAGAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGga                                                                                                                                   <  1:898529/141‑1 (MQ=255)                        cTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGgaga                                                                                                                                 >  1:296633/1‑141 (MQ=255)                         ttGCATTAGCAAATTTATTATTAGGTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTCTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGAc                                                                                                                                <  1:763273/141‑1 (MQ=255)                                    aaTTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCTAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTATTGTAGCCAAACTGGAGACTTTTAACATaa                                                                                                                     >  1:749213/1‑141 (MQ=255)                                      tttATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTAt                                                                                                           >  2:52931/1‑149 (MQ=255)                                          ttattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTAc                                                                                                               >  1:675142/1‑141 (MQ=255)                                               aGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACCTAAAATTACTTATCATTCaaaa                                                                                                  <  2:489126/149‑1 (MQ=255)                                                     tGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaaa                                                                                            >  2:106180/1‑149 (MQ=255)                                                     tGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaaa                                                                                            <  2:199507/149‑1 (MQ=255)                                                     ggCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaaa                                                                                            <  2:366982/148‑1 (MQ=255)                                                        aCTTACTAACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATACAAACTGGAGACTTTTAACATAAAATTAcaaaaaaaaaaaaaa                                                                                                 <  1:366353/141‑15 (MQ=255)                                                         cTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg                                                                                                >  1:828169/1‑141 (MQ=255)                                                          ccacagACTATACTGCCAAAGCCGAATCAAAGATAGAAGATACTGATTTAAACATCGTTAGTCATAACGTTTATAT‑GTAAGCGACACTATTGTATCCAAACAGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGt                                                                                               <  1:656402/136‑1 (MQ=255)                                                            aCTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGTAGACTTTTAACATAAAATTACTTATCATTCAACAAGTaa                                                                                             >  1:361111/1‑141 (MQ=255)                                                              tGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCataa                                                                                   >  2:139488/1‑149 (MQ=255)                                                                       tGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                          >  2:206520/1‑149 (MQ=255)                                                                          cAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATc                                                                               <  1:1164147/141‑1 (MQ=255)                                                                          cAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTta                                                                       <  2:523250/149‑1 (MQ=255)                                                                            aaGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGAATAATATCAAGGTTtata                                                                     >  2:649148/1‑149 (MQ=255)                                                                             aGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAg                                                                            >  1:414353/1‑141 (MQ=255)                                                                               ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCCAAAAGTAAAACAGCATAATATCAAGGt                                                                          >  1:1055090/1‑141 (MQ=255)                                                                               ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt                                                                          >  1:1029971/1‑141 (MQ=255)                                                                               ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGAAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATAAAGGt                                                                          >  1:245007/1‑141 (MQ=255)                                                                               ccGAATCTAAGAAAGATGATAATGGGTTTAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATAAAGGt                                                                          >  1:1150432/1‑141 (MQ=255)                                                                                   accTAATAAAGATGATACTGATTTGAAGTTAGATAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCAAAACTGGCGACTTTTAACATAAAATTAAAAATAAAAAAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                                      <  1:886443/139‑1 (MQ=255)                                                                                   aTCTAAGAAAGATGATTCTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat                                                                      <  1:711527/141‑1 (MQ=255)                                                                                   aTCTAAGAAAGATGATACTGATTTGAAGTTAGTTATTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttat                                                              <  2:857008/149‑1 (MQ=255)                                                                                    tCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtata                                                                     <  1:389987/141‑1 (MQ=255)                                                                                     cTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatca                                                            >  2:538745/1‑149 (MQ=255)                                                                                      tAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAAc                                                                   <  1:78965/141‑1 (MQ=255)                                                                                        agaaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACtt                                                                 >  1:1086886/1‑141 (MQ=255)                                                                                        agaaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACtt                                                                 >  1:213355/1‑141 (MQ=255)                                                                                        agaaagaTGATACTGAATCGACGTCAGCTAGGCAGAACGTTTCTATCGTGGTC‑ACCGTTTTGTATCCAACCTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatta                                                         <  2:675996/149‑1 (MQ=255)                                                                                          aaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTtta                                                               >  1:844741/1‑141 (MQ=255)                                                                                          aaagaTGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTtta                                                               <  1:655400/141‑1 (MQ=255)                                                                                                   aCTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTAATAAGTttatcattataa                                                      >  1:1013355/1‑139 (MQ=255)                                                                                                    ttGATTTGAAGGTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAACATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCt                                             <  2:716868/148‑1 (MQ=255)                                                                                                     tGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaat                                                    <  1:778269/141‑1 (MQ=255)                                                                                                     tGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaat                                                    <  1:1104197/141‑1 (MQ=255)                                                                                                       aTTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCat                                          <  2:36665/149‑1 (MQ=255)                                                                                                       aTTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCat                                          <  2:576048/149‑1 (MQ=255)                                                                                                       aTTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCat                                          <  2:70131/149‑1 (MQ=255)                                                                                                        tttGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaataat                                                 >  1:370217/1‑141 (MQ=255)                                                                                                        tttGAAGTTAGTTAGTCATAACGTTTATAT‑GGTATCGACCGTTTTGTATCCAAACTGGGGCGTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAATGGTTATAAATTTATCATGATAaaaaat                                                 >  1:42434/1‑141 (MQ=255)                                                                                                          tGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACTGTTTTGTATCCATACTGGTGTCTTTTTACATAAAATTACTTATCATTCAAAAAGTAAAACAGCTTAATATCAAGGTTTATTACTTTTTTATTGTACataatat                                               >  1:423641/1‑140 (MQ=255)                                                                                                                    tagtGATTAGGTTTTTAT‑GTTTGCTACCGTTTTGTATCCAATCTGTTGATTTTTAACATAAAATTACTTATCATTCAAAAATTAAAACAGCATAATATCATGTTTTATAACTTTATCATTATCAATAATACCTCATataaa                                     <  1:862195/141‑1 (MQ=255)                                                                                                                    tagtCATAACGGTTATAT‑GTTATCGTCCGTTTTGTATCTAAACTGGAGAATTTTAGCATATTATTAATAAAAAAAAAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaa                                     <  1:807727/141‑1 (MQ=255)                                                                                                                           aaCGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggga                      >  2:252025/1‑149 (MQ=255)                                                                                                                           aaCGTTTATAT‑GTTAGCGACCGTATTCTATGCAAACTGGAGATTTTTAACATAATATGACTTATCATTCAAAAAGTAAAACTGCAGAATAGCAAGGGTTATAACTTTATCATTATCAATAATACCTCATATgaaataacat                              <  1:485629/141‑1 (MQ=255)                                                                                                                           aaCGTTTAGAT‑GTTATCGACCGTTTTGTATCCAAACTGTAGACTTTTAACATAAAATTACTTTTAATTCAAAAAGTAAAACAGCATAGTATCAAGGTTTCTAACTTTATCATTATCAATAATACCTCATATaaaatacaat                              >  1:556976/1‑141 (MQ=255)                                                                                                                               tttATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATAAAGGTTTATAACTTTATCATTATCAATAATAACTCATATAAAATAAAAtttta                          >  1:160175/1‑141 (MQ=255)                                                                                                                               tttATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAAAATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtttta                          >  1:489991/1‑141 (MQ=255)                                                                                                                                   tat‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATCATACCTCATATAAACTAAAAttttaggga                      >  1:643095/1‑141 (MQ=255)                                                                                                                                   tat‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggaa                      >  1:538828/1‑139 (MQ=255)                                                                                                                                    at‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggac                     >  1:869941/1‑141 (MQ=255)                                                                                                                                       gTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTGAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga           >  2:805444/1‑149 (MQ=255)                                                                                                                                       gTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttgtagggactttttgggga           >  2:73578/1‑149 (MQ=255)                                                                                                                                        ttATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac          >  2:240506/1‑149 (MQ=255)                                                                                                                                        tacaaggtttctatGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTAATATAAAATAAAAttttagggacttt                  >  1:580677/14‑141 (MQ=255)                                                                                                                                        tacaaggtttctatGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATACAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggcacttt                  >  1:869342/14‑141 (MQ=255)                                                                                                                                          aTCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt        <  2:453739/149‑1 (MQ=255)                                                                                                                                             gACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaa     >  2:429937/1‑149 (MQ=255)                                                                                                                                               ccGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga           >  1:899992/1‑141 (MQ=255)                                                                                                                                                cGTTTTGTATCCAAACTTGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCGAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaaatt  <  2:143157/149‑1 (MQ=255)                                                                                                                                                cGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCACATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaaatt  <  2:670887/149‑1 (MQ=255)                                                                                                                                                     tGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaa     <  1:1018508/141‑1 (MQ=255)                                                                                                                                                     tGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaa     <  1:870135/141‑1 (MQ=255)                                                                                                                                                     tGTATCCAAAATAGAGACTTTTAAAATAAAATTACGTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACtttaa     <  1:358319/141‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                ATTCACTAAAAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATAT‑GTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTTAAATT  >  CP000730/2085149‑2085439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.