New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2679162 =	111 (1.120)	3 (0.030)	3/246	NT	2.7%	intergenic (+34/‑355)	USA300HOU_2535/cbpD	hypothetical protein/possible secretory antigen
	?	CP000730	2679186 =	107 (1.130)					intergenic (+58/‑331)	USA300HOU_2535/cbpD	hypothetical protein/possible secretory antigen
Rejected: Frequency below/above cutoff threshold.

GATTGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2679306‑2679162 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctaTTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAATCCTGACATCCTTGTATCAC  >  CP000730/2679186‑2679324                                                                                                                                                                                                                                                                                               GATTGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGCTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGC                                                                                                                                                 <  1:711776/141‑1  ATTGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCG                                                                                                                                                <  2:129347/141‑1  ATTGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCG                                                                                                                                                <  2:213147/141‑1    TGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCGCT                                                                                                                                              <  1:37962/141‑1    TGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCGCT                                                                                                                                              <  2:1137083/141‑1    TGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCGCT                                                                                                                                              <  1:181093/141‑1    TGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCGCT                                                                                                                                              <  1:108661/141‑1     GATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCGCTA                                                                                                                                             >  1:500950/1‑141                                    AAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCTCTG‑ATTGCAGGGCGCTATTTTTAATGTTATTG                                                                                                                              >  2:556557/1‑125                                    AAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCTCTG‑ATTGCAGGGCGCTATTTTTAATGTTATTG                                                                                                                              <  1:556557/125‑1                                                                                                                            GCGCCCTGCAAT‑CAGAGCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTACATTTTCCCACTAATATCCGCTGTTAATCAA                      >  1:987275/1‑141                                                                                                                                             GCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAATCCTGACATCCTTGTA      <  2:1136527/141‑1                                                                                                                                             GCGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAATCCTGACATCCTTGTA      <  2:181093/141‑1                                                                                                                                              CGCTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAGCCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAATCCTGACATCCTTGTAT     <  1:948367/141‑1                                                                                                                                                CTATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAATCCTGACATCCTTGTATCA   <  2:1112674/141‑1                                                                                                                                                 TATTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAATCCTGACATCCTTGTATCAC  <  1:344313/141‑1                                                                                                                                                                                                                                                                                               GATTGATTAACAGCGGATATTAGTGGGAAAATATAAAATGATTTAAAAAAAAGGTACATGGTTCTATAACTGAAAGAAAATAGCAATCACAATATACTAAATGTAGCAATAACATTAAAAATAGCGCCCTGCAAT‑CAGAGCGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2679306‑2679162 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctaTTTTTAATGTTATTGCTACATTTAGTATATTGTGATTGCTATTTTCTTTCAGTTATAGAACCATGTACCTTTTTTTTAAATCATTTTATATTTTCCCACTAATATCCGCTGTTAATCAATCCTGACATCCTTGTATCAC  >  CP000730/2679186‑2679324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.