New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1226920 =	45 (1.080)	3 (0.080)	3/240	NT	7.4%	intergenic (+53/‑612)	USA300HOU_1151/def2	hypothetical lipoprotein/formylmethionine deformylase
	?	CP000730	1227017 =	33 (0.850)					intergenic (+150/‑515)	USA300HOU_1151/def2	hypothetical lipoprotein/formylmethionine deformylase

ACCTGCTGATGAACAAGGTAATGTCACTTTATAAATTGATAAAAATAAATCCCGATGACAATCATTTATTATTTGCGAATCATAGAGTTATAGTTATTACGAACTCTATGTGATAAGCAGTAATGCTGATTGTTTATCGGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1227063‑1226920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgggattTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCA  >  CP000730/1227017‑1227057                                                                                                                                                                                           ACCTGCTGATGAACAAGGTAATGTCACTTTATAAATTGATAAAAATAAATCCCGATGACAATCATTTATTATTTGCGAATCATAGAGTTATAGTTATTACGAACTCTATGTGATAAGCAGTAATGCTGATTGTTTATCGGG                                              >  2:442697/1‑141                                     TGATAAAAATAAATCCCGATGACAATCATTTATTATTTGCGAATCATAGAGTTATAGTTATTACGAACTCTATGTGATAAGCAGTAATGCTGATTGTTTATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTT          >  2:128416/1‑141                                          AAAATAAATCCCGATGACAATCATTTATTATTTGCGAATCATAGAGTTATAGTTATTACGAACTCTATGTGATAAGCAGTAATGCTGATTGTTTATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCA     >  1:51494/1‑141                                             ATAAATCCCGATGACAATCATTTATTATTTGCGAATCATAGAGTTATAGTTATTACGAACTCTATGTGATAAGCAGTAATTCTGATTGTTTATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCA  >  1:172436/1‑141                                                                                                                                                                                           ACCTGCTGATGAACAAGGTAATGTCACTTTATAAATTGATAAAAATAAATCCCGATGACAATCATTTATTATTTGCGAATCATAGAGTTATAGTTATTACGAACTCTATGTGATAAGCAGTAATGCTGATTGTTTATCGGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1227063‑1226920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgggattTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCA  >  CP000730/1227017‑1227057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.