Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 76,322 G→A 49.0% intergenic (+380/‑754) USA300HOU_0072 → / → USA300HOU_0075 universal stress protein/lysophospholipase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073076,3220GA49.0% 27.9 / 287.1 226intergenic (+380/‑754)USA300HOU_0072/USA300HOU_0075universal stress protein/lysophospholipase
Reads supporting (aligned to +/- strand):  ref base G (66/49);  new base A (64/47);  total (130/96)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01

Only 100 of 226 total aligned reads displayed.

AGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGACGTACATCAAAA  >  CP000730/76184‑76457
                                                                                                                                          |                                                                                                                                        
      aTTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACgtg‑g                                                                                                                                 >  1:115596/1‑141 (MQ=17)
       ttttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACgtg‑gt                                                                                                                                >  1:209413/1‑141 (MQ=32)
       ttttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACatg‑gt                                                                                                                                >  1:206246/1‑141 (MQ=12)
       ttttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGAGATGCATTGAGTTATCGTGATATATCTGCAAGATTAAGGGAACgtg‑gt                                                                                                                                >  2:82767/1‑141 (MQ=12)
        tttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACggg‑gtg                                                                                                                               >  2:110358/1‑141 (MQ=17)
        tttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTCATATATCTGAAATATTAAGGGAACgtg‑gtg                                                                                                                               >  2:235741/1‑141 (MQ=17)
         ttAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑gtgt                                                                                                                              <  1:310058/141‑1 (MQ=17)
           aaCAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGAGATGCATTGAGTTATCGTGCTATATCTGAACTATTAAGGGAACGTG‑GTGTaa                                                                                                                            >  1:21601/1‑141 (MQ=255)
             cAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAAc                                                                                                                          >  2:28773/1‑141 (MQ=17)
             cAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAAc                                                                                                                          >  1:95711/1‑141 (MQ=32)
              aaaaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACg                                                                                                                         <  1:255967/141‑1 (MQ=12)
              aaaaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACg                                                                                                                         <  2:132959/141‑1 (MQ=17)
                aaaGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGtt                                                                                                                       >  1:73529/1‑141 (MQ=17)
                  aGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAATTATTAAGGGAACGTG‑GTGTAAACGTtcc                                                                                                                     >  1:37336/1‑140 (MQ=17)
                   ggAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTtcat                                                                                                                    >  1:342284/1‑141 (MQ=17)
                   ggAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTtcat                                                                                                                    <  2:152192/141‑1 (MQ=17)
                   ggAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTtcat                                                                                                                    <  1:198847/141‑1 (MQ=17)
                    gAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGTTGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATAACTGAAATATTAAGAGGACGTG‑GTGTAGACGTtcatc                                                                                                                   >  2:188712/1‑141 (MQ=11)
                    gAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTtcatc                                                                                                                   >  2:210508/1‑141 (MQ=17)
                     aGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTtcatca                                                                                                                  >  2:263784/1‑141 (MQ=17)
                     aGTCTTCTGTATGAACTATTTCAGATATAAACAAGTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTtcatca                                                                                                                  <  1:1195/141‑1 (MQ=255)
                      gTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTcatcat                                                                                                                 >  1:171190/1‑141 (MQ=12)
                      gTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTcatcat                                                                                                                 >  1:130731/1‑141 (MQ=17)
                      gTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGCTcatcat                                                                                                                 >  2:200650/1‑141 (MQ=12)
                      gTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTACCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACATTcatcat                                                                                                                 >  2:260914/1‑141 (MQ=255)
                       tcttctGTTTGAACTATTTCAGATATAAACAATTTAACAAGGCTGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCAtt                                                                                                                <  2:47218/141‑1 (MQ=12)
                       tcttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCAtt                                                                                                                >  1:195149/1‑141 (MQ=17)
                        cttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTc                                                                                                               >  2:101219/1‑141 (MQ=17)
                        cttctGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTc                                                                                                               >  2:368456/1‑141 (MQ=32)
                            tGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCacca                                                                                                           >  1:58826/1‑138 (MQ=12)
                             gTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACgg                                                                                                          <  2:22444/141‑1 (MQ=32)
                              tATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGt                                                                                                         >  2:89601/1‑141 (MQ=17)
                              tATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGt                                                                                                         <  1:19407/141‑1 (MQ=17)
                              tATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACgat                                                                                                         <  2:35675/141‑3 (MQ=12)
                                tGAACTATTTCAGATCTAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTACGATATGCATTGAGGTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAAAGTTCATCATTCAACGGTCt                                                                                                       >  2:213949/1‑141 (MQ=11)
                                   aCTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTAcc                                                                                                    >  1:60671/1‑141 (MQ=12)
                                    cTATTTCAGCTATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATCTGCATTGAGTTATCGTGATATGACTGAATGATTAGGGCGACGTG‑GTGTTGACGTTCCTCATTGCACGGTCTTCCg                                                                                                   >  2:292637/1‑141 (MQ=11)
                                      ttttCCGATATAAACAATTTCACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGtt                                                                                                 <  2:193461/140‑1 (MQ=11)
                                      aTTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGtt                                                                                                 >  1:303221/1‑141 (MQ=17)
                                       tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTg                                                                                                <  1:112097/141‑1 (MQ=12)
                                       tttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTg                                                                                                <  1:92849/141‑1 (MQ=12)
                                        ttCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTgg                                                                                               >  2:26747/1‑141 (MQ=17)
                                         tCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTggg                                                                                              <  1:291983/141‑1 (MQ=12)
                                          cAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATGATTCAAGGATCTACCGTTGGGt                                                                                             >  2:197192/1‑141 (MQ=11)
                                           aGATATAAACAATTTACCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGtt                                                                                            >  2:171932/1‑141 (MQ=11)
                                           aGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGtt                                                                                            >  1:164112/1‑141 (MQ=32)
                                           aGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGtt                                                                                            >  2:119287/1‑141 (MQ=255)
                                            gATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAACTATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTc                                                                                           >  2:165617/1‑141 (MQ=17)
                                            gATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTc                                                                                           <  1:234082/141‑1 (MQ=255)
                                             atatAAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCa                                                                                          <  1:271861/141‑1 (MQ=17)
                                              tataAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATGGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGCCTACCGTTGGGTTCag                                                                                         >  1:356164/1‑140 (MQ=12)
                                              tataAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCaa                                                                                         >  2:286583/1‑141 (MQ=255)
                                                taAACAATTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGa                                                                                       >  1:146869/1‑141 (MQ=17)
                                                taAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATACGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGa                                                                                       >  2:27763/1‑141 (MQ=17)
                                                  aaCAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAat                                                                                     <  2:54938/141‑1 (MQ=32)
                                                     aaTTTAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATg                                                                                  <  1:137732/141‑1 (MQ=17)
                                                      aTTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTAAACGATCTCCCGTTGGGTTCAAGAACATGc                                                                                 >  2:84667/1‑141 (MQ=11)
                                                         tAACAAGGATGTTATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGcccc                                                                              <  2:334809/141‑1 (MQ=17)
                                                           aCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCaa                                                                            <  2:95711/141‑1 (MQ=32)
                                                           aCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTATGAGAACGTG‑GTGTAAAAGTTCATCATTCAACGATCTAACGTTGGGTTCAAGAATGTGCCCCaa                                                                            >  1:85380/1‑141 (MQ=11)
                                                           aCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCaa                                                                            >  1:98996/1‑141 (MQ=255)
                                                           aCAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATAATTCAACGATCTACCGTTGGGTTCAAGAATATACCCCaa                                                                            >  2:135193/1‑141 (MQ=11)
                                                             aaGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAAtt                                                                          >  2:283246/1‑141 (MQ=12)
                                                              aGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGAGCA‑GTGCAGGAAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCACttt                                                                         >  1:367510/1‑141 (MQ=11)
                                                                 aTGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTtat                                                                      <  2:233478/141‑1 (MQ=255)
                                                                  tGTTATCACTGTAGCTGTTGGTTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTtata                                                                     <  1:152956/141‑1 (MQ=25)
                                                                    ttATCACTGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATc                                                                   >  1:336915/1‑141 (MQ=25)
                                                                    ttATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATc                                                                   >  1:28415/1‑141 (MQ=255)
                                                                     tATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCTTGATATATTTGAAATATTAAGAGATCGTG‑GTGTAAACGTTCATCATTCAACGTTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCa                                                                  <  2:19584/141‑1 (MQ=11)
                                                                     tATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCa                                                                  <  2:60671/141‑1 (MQ=255)
                                                                      aTCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCaa                                                                 >  2:276000/1‑141 (MQ=255)
                                                                       tCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCaaa                                                                >  2:203350/1‑141 (MQ=255)
                                                                           tGTAGCTGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTg                                                            <  1:28773/141‑1 (MQ=21)
                                                                            gcaGCCGTTGGCTACTATCTAAGACATGCATTGAGTTATCGCGATATATCTGAAATATTAAGGGAACGTG‑GTGTAATCGCTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTgg                                                           <  1:82767/139‑1 (MQ=255)
                                                                            gTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTgg                                                           <  2:104872/141‑1 (MQ=35)
                                                                             tAGCCGTTGGCTACTATCTAAGATCTGCATTGAGCTATCGTGATATATCGGAAGTATTAAGAGACGGTG‑GAGAAAAGGTTCATCATTCAACGATCGAGCGTTGGGTGCAAGAATATGCCCCAAGTTTAGATCAAATTTGga                                                          >  2:320178/1‑141 (MQ=11)
                                                                              aGCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCCAATTTGgaa                                                         >  1:29865/1‑141 (MQ=255)
                                                                               gCCGTTGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGgaag                                                        >  2:372491/1‑141 (MQ=255)
                                                                                 tgTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGGAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAGTTTGgaagaa                                                      >  2:308894/2‑141 (MQ=21)
                                                                                   ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGaaaa                                                    >  2:177083/1‑141 (MQ=34)
                                                                                   ttGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGaaaa                                                    >  1:335337/1‑141 (MQ=35)
                                                                                   ttGGCTACTATCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGACTATGCCCCAATTTTATATCAAATTTGGAAGaaaa                                                    >  1:68700/1‑141 (MQ=11)
                                                                                   ttGGATAGTATCAAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGATTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGaaaa                                                    >  2:44382/1‑141 (MQ=11)
                                                                                     ggttacttTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAg                                                  <  2:130687/138‑1 (MQ=255)
                                                                                     ggCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAg                                                  <  1:197693/141‑1 (MQ=35)
                                                                                       ctactaTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCa                                                <  2:24166/141‑1 (MQ=35)
                                                                                        tactaTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGcgt                                               <  2:343328/141‑3 (MQ=25)
                                                                                          ctaTCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGTACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaa                                             >  1:246750/1‑141 (MQ=25)
                                                                                          ctaTCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaa                                             <  1:245157/141‑1 (MQ=255)
                                                                                          ataTCTAAGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaa                                             <  1:106540/140‑1 (MQ=255)
                                                                                           aaTCTAAGATATTCATTGAGCTAACGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaa                                            <  2:104296/140‑1 (MQ=11)
                                                                                                 aGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaagct                                      >  2:339999/1‑137 (MQ=11)
                                                                                                 aGATATGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATaaaaaaact                                      >  2:69117/1‑137 (MQ=11)
                                                                                                   atatGCATTGAGCTATCGTGATATATCTGAAATATTAAGAGAACGTG‑GTGTAAACGTTCATCATTCAACGATCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAACAAGCATaaaaaagctta                                    >  1:327324/1‑135 (MQ=11)
                                                                                                      tGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTaa                                 >  1:128938/1‑140 (MQ=40)
                                                                                                      tGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTAc                                 <  1:232084/141‑1 (MQ=255)
                                                                                                                tATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTAATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTa                       >  1:12623/1‑141 (MQ=255)
                                                                                                                   cGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTAttt                    >  1:191059/1‑140 (MQ=39)
                                                                                                                       atatatCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCCATTGTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATtgatga                <  1:103729/141‑1 (MQ=255)
                                                                                                                        tatatCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATgag               >  1:220074/1‑141 (MQ=38)
                                                                                                                                          |                                                                                                                                        
AGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGAACGTG‑GTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTATATCAAATTTGGAAGAAAAAGCATAAAAAGCTAATTACAAATGGCGTATTGATGAGACGTACATCAAAA  >  CP000730/76184‑76457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑