| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1804958 | 26 (0.290) | 11 (0.130) | 4/268 | 12.9 | 21.1% | intergenic (+1930/+395) | cycA/pykA | APC family amino acid‑polyamine‑organocation transporter/pyruvate kinase |
| ? | CP000730 | 1910822 = | 57 (0.650) | intergenic (+355/+1728) | sigS/ytbE | camphor resistance protein/possible aldo/keto reductase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GGCAAAGTGTTTTATTTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1804815‑1804958‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatacTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGAT > CP000730/1910822‑1910960 GGCAAAGTGTTTTATTTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAA < 2:760759/141‑1GGCAAAGTGTTTTATTTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAA > 1:50661/1‑141 CAAAGTGTTTTATTTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATA < 2:572746/141‑1 GTGTTTTATTTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATACAATACTtc < 1:772045/141‑3 gccTTATGTTTTGAAAGTACGTAAAAGTAAAACTACATGTTACTGCGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCTAAGACCGAGGCTTAGACGGCACCCTAGGAAAGCGAAGCCATGCACTACTTCGT < 2:450942/138‑1 TTATTTTTTTAAAGTATGTAAAAGTAAAATTCCATGTTAATACGTAGTATGAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATACAATACTTCGTATT < 2:318107/141‑1 CATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTAACATGTAATTTTACTTTTAAATACTT‑T‑GAAA > 1:907734/1‑141 GTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACTACGTATTAACATGTAATTTTACTTTTACATACTTAT‑AAAAAATAAGACACTTT > 2:233292/1‑141 ATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAAC > 2:950111/1‑141 TGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTT > 2:893397/1‑141 TGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTGAAATACTT‑A‑AAAAAATAAAACACTTTGCCCAACTT > 1:538842/1‑141 GCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATT‑AATACTACGTATTAACGTGTAATTTTACTTTGAAATACTT‑TAAAAAAATAAGACACTTTGCCCAACTTg > 1:1047182/1‑140 GAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACA > 1:464822/1‑141 TGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTG < 1:950111/141‑1 ATACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACG > 1:883988/1‑141 TACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGA > 2:781057/1‑141 TACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGA > 2:647816/1‑141 ACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGAT > 2:608455/1‑141 GGCAAAGTGTTTTATTTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1804815‑1804958‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatacTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGAT > CP000730/1910822‑1910960 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |