| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1910817 = | 57 (0.630) | 10 (0.110) | 4/268 | 12.9 | 17.4% | intergenic (+350/+1733) | sigS/ytbE | camphor resistance protein/possible aldo/keto reductase |
| ? | CP000730 | 2317562 = | 40 (0.460) | intergenic (+215/+1901) | rhbC/asp23 | possible Iuc family aerobactin synthesis protein/alkaline shock protein 23 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCGTTTCAACAATTTCATTAACATATCGCGAAATATCATTTTGAGGAATTCTAACAGAGGTTTCTATTGGTAGTGTAAGTTGGGCAAAGTGTCTTA‑TTTTTTA‑AAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1910960‑1910817‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtattGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACTTTGCC > CP000730/2317562‑2317700 ATCGTTTCAACAATTTCATTAACATATCGCGAAATATCATTTTGAGGAATTCTAACAGAGGTTTCTATTGGTAGTGTAAGTTGGGCAAAGTGTCTTA‑TTTTTTA‑AAGTATGTAAAAGTAAAATTACATGTTAATACGTAGT < 2:608455/141‑1 TCGTTTCAACAATTTCATTAACATATCGCGAAATATCATTTTGAGGAATTCTAACAGAGGTTTCTATTGGTAGTGTAAGTTGGGCAAAGTGTCTTA‑TTTTTTA‑AAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTA < 2:781057/141‑1 TCGTTTCAACAATTTCATTAACATATCGCGAAATATCATTTTGAGGAATTCTAACAGAGGTTTCTATTGGTAGTGTAAGTTGGGCAAAGTGTCTTA‑TTTTTTA‑AAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTA < 2:647816/141‑1 CGTTTCAACAATTTCATTAACATATCGCGAAATATCATTTTGAGGAATTCTAACAGAGGTTTCTATTGGTAGTGTAAGTTGGGCAAAGTGTCTTA‑TTTTTTA‑AAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTAT < 1:883988/141‑1 CAGAGGTTTCTATTGGTAGTGTAAGTTGGGCAAAGTGTCTTA‑TTTTTTA‑AAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCA > 1:950111/1‑141 TGTAAGTTGGGCAAAGTGTCTTA‑TTTTTTA‑AAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTC < 1:464822/141‑1 cAAGTTGGGCAAAGTGTCTTATTTTTTTA‑AAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATT‑AATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGC < 1:1047182/140‑1 AAGTTGGGCAAAGTGTTTTA‑TTTTTTT‑AAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTTGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCA < 1:538842/141‑1 AAGTTGGGCAAAGTGTCTTA‑TTTTTTA‑AAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCA < 2:893397/141‑1 GTTGGGCAAAGTGTCTTA‑TTTTTTA‑AAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCAT < 2:950111/141‑1 AAAGTGTCTTA‑TTTTTTATAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATAC < 2:233292/141‑1 tttcA‑AAGTATTTAAAAGTAAAATTACATGTTAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATG < 1:907734/137‑1 AATACGAAGTATTGTATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTCATACTACGTATTAACATGGAATTTTACTTTTACATACTTTAAAAAAATAA > 2:318107/1‑141 ACGAAGTAGTGCATGGCTTCGCTTTCCTAGGGTGCCGTCTAAGCCTCGGTCTTAGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGCAGTAACATGTAGTTTTACTTTTACGTACTTTCAAAACATAAGgc > 2:450942/1‑139 TATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACTTTG > 1:938965/1‑141 TATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACTTTG < 2:783118/141‑1 TATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACTTTG > 2:853185/1‑141 TATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACTTTG > 1:394101/1‑141 TTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACTTTGCC < 1:65134/141‑1 ATCGTTTCAACAATTTCATTAACATATCGCGAAATATCATTTTGAGGAATTCTAACAGAGGTTTCTATTGGTAGTGTAAGTTGGGCAAAGTGTCTTA‑TTTTTTA‑AAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1910960‑1910817‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtattGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACTTTGCC > CP000730/2317562‑2317700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |