New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 263520	58 (1.490)	4 (0.110)	4/268	5.4	7.1%	intergenic (+19/‑85)	pflA/USA300HOU_0235	[formate‑C‑acetyltransferase]‑activating enzyme/hypothetical protein
	?	CP000730	= 263562	49 (1.310)					intergenic (+61/‑43)	pflA/USA300HOU_0235	[formate‑C‑acetyltransferase]‑activating enzyme/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATTGGGCATTGCATATGAATTAGAAGATGTCGAAGCGCCCGATGATGAAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/263392‑263520 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaaaAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTCGGTCTGAATTGTATTTATAATTCAACGGGAATTTTCCCTTTGAAGTTAACATAACGGTAGGCTGCTTTAACAGCTTCATCATCGGGCGCTTC  <  CP000730/263562‑263424                                                                                                                                                                                                                                                                              CATTGGGCATTGCATATGAATTAGAAGATGTCGAAGCGCCCGATGATGAAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCG‑AAAAGAAGCATATGCC                                                                                                                                <  1:323560/141‑1                          AGATGTCGAAGCGCCCGATGATGAAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCG‑AAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGC                                                                                                       <  1:252965/141‑1                                                               GCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCT                                                                                                      >  2:446957/1‑106                                                               GCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCT                                                                                                      <  1:446957/106‑1                                                                                                                               AAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTCGGTCTGAATTGTATTTATAATTCAACGGGAATTTTCCCTTTGAAGTTAACATAACGGTAGGCTGCTTTAACAGCTTCATCATCGGGCGCTT   <  1:377272/141‑1                                                                                                                                AAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTCGGTCTGAATTGTATTTATAATTCAACGGGAATTTTCCCTTTGAAGTTAACATAACGGTAGGCTGCTTTAACAGCTTCATCATCGGGCGCTTC  >  1:277349/1‑141                                                                                                                                AAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTCGGTCTGAATTGTATTTATAATTCAACGGGAATTTTCCCTTTGAAGTTAACATAACGGTAGGCTGCTTTAACAGCTTCATCATCGGGCGCTTC  >  1:285391/1‑141                                                                                                                                AAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTCGGTCTGAATTGTATTTATAATTCAACGGGAATTTTCCCTTTGAAGTTAACATAACGGTAGGCTGCTTTAACAGCTTCATCATCGGGCGCTTC  <  2:264986/141‑1                                                                                                                                                                                                                                                                              CATTGGGCATTGCATATGAATTAGAAGATGTCGAAGCGCCCGATGATGAAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/263392‑263520 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaaaAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTCGGTCTGAATTGTATTTATAATTCAACGGGAATTTTCCCTTTGAAGTTAACATAACGGTAGGCTGCTTTAACAGCTTCATCATCGGGCGCTTC  <  CP000730/263562‑263424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.