| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 36,413 | 0 | C | T | 57.1% | 123.6 / inf | 368 | V47I (GTC→ATC) | tpn | IS431mec transposase |
| Reads supporting (aligned to +/- strand): ref base C (82/75); new base T (96/113); total (180/188) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.85e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 374 total aligned reads displayed.
AATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCAT > CP000730/36273‑36551 | aaTGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGAc > 1:77338/1‑141 (MQ=21) tGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCg < 2:404343/141‑1 (MQ=255) cACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGttt > 2:412598/1‑140 (MQ=255) cACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTg > 1:358676/1‑141 (MQ=255) aCGTTATAAATAGCTCCGTTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGa < 2:451302/141‑1 (MQ=11) aCGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGa > 1:229777/1‑141 (MQ=21) aCGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGa < 2:161420/141‑1 (MQ=21) aCGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGa > 1:387194/1‑141 (MQ=21) aCGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGa < 1:418766/141‑1 (MQ=21) aCGATATAAATAGCTCCATTTTCCTTTTATATTGATGTACGTCTCATCAATACGCCATTTGTAACAAGCTTTTTTATGCTTTTTCTTCCAAC‑TTCAATCTAAAAATGGGGCATATACAAGAACCCAACGGTAGACCGTTGa < 1:65271/141‑1 (MQ=11) cGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTGCGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGaa > 2:421701/1‑141 (MQ=21) cGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGATCATATTCTTGAACCCAACGGTATAACCTTGaa > 2:258364/1‑141 (MQ=11) cGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGaa > 1:443284/1‑141 (MQ=255) cGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGAAGATCGTTGaa > 1:25822/1‑141 (MQ=11) atatAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatg < 1:53709/141‑1 (MQ=18) tataAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatga > 1:102758/1‑141 (MQ=255) tataAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatga > 1:411057/1‑141 (MQ=255) tataAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTATTTTATGCTTTTTCTTCCAAA‑TTTAATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatga > 2:130347/1‑141 (MQ=11) taAATAGCTCCATTTTCCTTTTATTTTGATATACGTCNCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGGATCTTCTTTAACCCAACGGTAGATCGTGGAatgatg > 1:246988/1‑141 (MQ=11) aaaTAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAAtgatga > 2:29753/1‑141 (MQ=255) aaTAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGaa > 2:171628/1‑141 (MQ=21) aaTAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TGTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGaa < 2:9006/141‑1 (MQ=255) tAGCTTGATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATTCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACg < 2:38288/141‑1 (MQ=255) tAGCTCCATTTTCCTTTTATTTTGATATCCGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCATCCAAA‑TTTGATATAAAATCGGTGCATATTCTTGAGCCCAACTGTGGATCGTTGGATGATGAACg < 2:85433/141‑1 (MQ=11) aGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGt > 2:164463/1‑141 (MQ=18) aGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACTCAACGGTAGATCGTTGAATGATGAACGt > 1:400186/1‑141 (MQ=255) aGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGt > 2:236437/1‑141 (MQ=255) gCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTGTGCTTTTTCTTCCAAA‑ATTTATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGtt > 1:337198/1‑141 (MQ=11) cTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGttt > 1:13426/1‑141 (MQ=255) tCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTa > 1:262650/1‑141 (MQ=21) ccATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTac < 1:243059/141‑1 (MQ=255) aTTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGtggtgta < 2:292864/141‑7 (MQ=255) ttttCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTAcacc < 1:9170/141‑1 (MQ=21) ttttCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacc < 1:107934/141‑1 (MQ=255) ttttCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacc > 1:181475/1‑141 (MQ=255) ttttCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacc < 2:250454/141‑1 (MQ=255) ttttCCTTTTATTTTGAGATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacc < 1:392952/141‑1 (MQ=255) ccTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGt < 1:413088/141‑1 (MQ=255) cTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGtt < 2:72406/141‑1 (MQ=18) ttttATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTc > 1:46285/1‑141 (MQ=255) tttATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTcc > 2:238878/1‑141 (MQ=21) tttATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATGGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTcc > 1:233220/1‑141 (MQ=21) tttATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTct > 1:160574/1‑140 (MQ=255) ttATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTctc > 1:31357/1‑139 (MQ=255) tATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTctct < 2:430892/141‑4 (MQ=255) tATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTctct < 2:28470/141‑4 (MQ=255) aTTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt < 2:5836/141‑1 (MQ=21) aTTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt < 2:324396/141‑1 (MQ=40) aTTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCtt < 1:436537/141‑1 (MQ=11) aTTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCtt < 1:258705/141‑1 (MQ=11) aTTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCtt < 2:126655/141‑1 (MQ=11) aTTTCGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt < 2:397330/141‑1 (MQ=255) tttGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTaa < 1:291939/141‑1 (MQ=21) ttGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAat < 2:367780/141‑1 (MQ=18) ttGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTTTCTTAat > 2:287954/1‑141 (MQ=11) gatatACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAatat > 1:63091/5‑141 (MQ=11) gatatACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAatat > 2:351819/5‑141 (MQ=255) gatatACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAatat > 2:178399/5‑141 (MQ=255) gATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAatat > 2:108982/1‑141 (MQ=25) tACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCa < 1:208889/141‑1 (MQ=21) tACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCa < 1:214300/141‑1 (MQ=40) cGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGa > 1:405472/1‑141 (MQ=255) cGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGa > 1:239596/1‑141 (MQ=255) tcttATCAATACGACATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGata < 2:433263/141‑1 (MQ=11) tctcATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGata < 2:325528/141‑1 (MQ=255) ctcATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGatat < 2:75979/141‑1 (MQ=255) tcatcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGatata > 2:143731/1‑141 (MQ=21) atcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATc > 1:22024/1‑141 (MQ=21) tcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCa > 1:169117/1‑141 (MQ=21) caATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCAc > 1:193925/1‑141 (MQ=255) caATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCAc > 1:195356/1‑141 (MQ=21) aaTACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACg < 1:373592/141‑1 (MQ=25) aTACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGa > 1:370546/1‑141 (MQ=255) aTACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGa < 2:214173/141‑1 (MQ=255) tACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGAt < 1:137509/141‑1 (MQ=255) tACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGAt < 2:318784/141‑1 (MQ=255) cGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATag > 1:158323/1‑140 (MQ=255) cGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATaa > 1:89672/1‑141 (MQ=21) gCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATagc < 2:156038/141‑3 (MQ=255) gCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATagc < 2:372908/141‑3 (MQ=255) gCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAAc < 2:330503/141‑1 (MQ=40) ccATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATagct > 1:226167/1‑138 (MQ=11) ccATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGACATAGTCTTGAACCAAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCCGATATATCCTGCTAACt > 2:103673/1‑141 (MQ=11) tttGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCaa > 1:254808/1‑141 (MQ=11) tttGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCaa < 2:112628/141‑1 (MQ=11) tttGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCaa > 2:272063/1‑141 (MQ=21) tGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATg < 2:196618/141‑1 (MQ=11) tGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATg < 1:328100/141‑1 (MQ=11) tGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATg > 1:273090/1‑141 (MQ=11) tGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATg > 1:122152/1‑141 (MQ=21) tGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATg > 1:347192/1‑141 (MQ=40) taataaGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATgca > 1:148794/1‑139 (MQ=11) taataaGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATgca < 1:280085/141‑3 (MQ=17) aataaGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATgcat > 2:191385/1‑138 (MQ=11) ttttttttttttttttttCCAAA‑TTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCATATATATCACGATAACTCAATGTATATCTTat > 2:68177/1‑140 (MQ=11) tcCAAATTTTGATAAATAATTGTGGCATGTTCTTTAACCCAACGGTAGACTGTTGAATGATGAACGTTTACACCACGTTTCCTTAATATTTCATATATATCACGATAACTCAATGTATATCTTAGATATTAGcttaccgct > 2:204962/1‑133 (MQ=11) gATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATaa > 1:31864/1‑141 (MQ=35) ttGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGt > 1:301607/1‑141 (MQ=32) ttCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGttt < 1:11299/141‑1 (MQ=32) gACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAGTATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATAGCTGAAATAGTTCAt > 2:269551/1‑141 (MQ=17) | AATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAA‑TTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCAT > CP000730/36273‑36551 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |