New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2440041 =	66 (1.210)	5 (0.100)	5/244	2.8	7.2%	intergenic (+2/+64)	USA300HOU_2302/glvC	hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC
	?	CP000730	2440099 =	69 (1.390)					intergenic (+60/+6)	USA300HOU_2302/glvC	hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC
Rejected: Frequency below/above cutoff threshold.

ACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAA  >  CP000730/2439962‑2440239                                                                                                                                           |                                                                                                                                             aCGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTg                                                                                                                                           >  2:423636/1‑141 (MQ=255)      tGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGtatta                                                                                                                                      <  2:611968/141‑1 (MQ=255)       gCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGtattat                                                                                                                                     >  2:147429/1‑141 (MQ=255)        cAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTattatt                                                                                                                                    >  1:240436/1‑141 (MQ=255)         aaCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTAttattt                                                                                                                                   >  2:642014/1‑141 (MQ=255)         aaCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTAttattt                                                                                                                                   >  1:400747/1‑141 (MQ=255)             aGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCt                                                                                                                               <  1:577655/141‑1 (MQ=255)              gAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCtt                                                                                                                              >  2:99649/1‑141 (MQ=255)                aaTATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCg                                                                                                                            >  1:196551/1‑141 (MQ=255)                 atatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCgg                                                                                                                           <  1:187952/141‑1 (MQ=255)                  tatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGa                                                                                                                          <  2:93230/141‑1 (MQ=255)                   atCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGAc                                                                                                                         >  1:527352/1‑141 (MQ=255)                    tCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACg                                                                                                                        >  1:226281/1‑141 (MQ=255)                    tCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACg                                                                                                                        <  2:206054/141‑1 (MQ=255)                      gACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGAt                                                                                                                      >  2:412456/1‑141 (MQ=255)                        cATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTTGTATTATTTATCTTCGGACGAtt                                                                                                                     >  1:10041/1‑141 (MQ=255)                         aTTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGa                                                                                                                   <  1:398319/141‑1 (MQ=255)                         aTTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGa                                                                                                                   <  1:412456/141‑1 (MQ=255)                                cTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCaa                                                                                                            <  2:207239/141‑1 (MQ=255)                                cTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCaa                                                                                                            <  2:447074/141‑1 (MQ=255)                                    cAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAt                                                                                                        <  1:3720/141‑1 (MQ=255)                                       ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTg                                                                                                     >  2:593869/1‑141 (MQ=255)                                        tataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATAGATCCTCAACCATTTGt                                                                                                    >  1:169328/1‑141 (MQ=255)                                         ataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt                                                                                                   >  2:153408/1‑141 (MQ=255)                                           aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAt                                                                                                        <  1:201207/134‑1 (MQ=255)                                           aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAt                                                                                                        >  2:201207/1‑134 (MQ=255)                                              tCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAAt                                                                                              >  1:310987/1‑141 (MQ=255)                                                   aTCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTc                                                                                         <  2:240436/141‑1 (MQ=255)                                                        tGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGaa                                                                                    >  1:637394/1‑141 (MQ=255)                                                        tGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGaa                                                                                    <  2:603300/141‑1 (MQ=255)                                                           gCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACtt                                                                                 <  1:227969/141‑1 (MQ=255)                                                            cAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtg                                                                                >  2:479536/1‑141 (MQ=255)                                                              aaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGAGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtgtg                                                                              >  1:175880/1‑141 (MQ=255)                                                               aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTgg                                                                             <  1:423636/141‑1 (MQ=255)                                                                 cTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATTCTCTACAATTTGTTCAAATACTTCACGTACTTGTGGTa                                                                           >  2:376519/1‑141 (MQ=255)                                                                 cTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTa                                                                           >  1:362947/1‑141 (MQ=255)                                                                  tCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTAc                                                                          >  2:444670/1‑141 (MQ=255)                                                                  tCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTAc                                                                          <  2:400747/141‑1 (MQ=255)                                                                    gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTg                                                                        <  2:311324/141‑1 (MQ=255)                                                                     tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGt                                                                       <  1:46201/141‑1 (MQ=255)                                                                     tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGt                                                                       <  1:490058/141‑1 (MQ=255)                                                                     tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGt                                                                       <  1:397542/141‑1 (MQ=255)                                                                      atatCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATATTAGGACAATAGATGCTCAGCCAGTTGTTCAAATGCTTCACGAACTTGTGGTACTGTc                                                                      >  1:258136/1‑141 (MQ=255)                                                                           ataataAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAcc                                                                 >  2:579072/1‑141 (MQ=255)                                                                              ataaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctac                                                              <  1:390221/141‑1 (MQ=255)                                                                              ataaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctac                                                              >  2:517028/1‑141 (MQ=255)                                                                                    agacacatcactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACaa                                                         >  1:445664‑M2/56‑141 (MQ=255)                                                                                     gacacatcactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACcta                                                               >  2:323064‑M2/55‑134 (MQ=255)                                                                                     gacacatcactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACcta                                                               <  1:323064‑M2/80‑1 (MQ=255)                                                                                      CACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACtt                                                      <  1:32439‑M1/141‑1 (MQ=255)                                                                                      CACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACtt                                                      >  2:229763‑M1/1‑141 (MQ=255)                                                                                         catcactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACg                                                                                      >  2:407530‑M2/51‑107 (MQ=255)                                                                                         catcactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACg                                                                                      <  1:407530‑M2/57‑1 (MQ=255)                                                                                                cGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCtt                                            <  2:366679/141‑1 (MQ=255)                                                                                                cGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCtt                                            <  2:366605/141‑1 (MQ=255)                                                                                                cGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCtt                                            <  1:236432/141‑1 (MQ=255)                                                                                                  atgatCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTAc                                          <  1:100341/141‑1 (MQ=255)                                                                                                  atgatCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTAc                                          >  1:200216/1‑141 (MQ=255)                                                                                                    gatCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTTTTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTTTCATACCTACTACAACTTGGATACTCTTACCa                                        >  2:212232/1‑141 (MQ=255)                                                                                                     atCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCAc                                       >  2:257111/1‑141 (MQ=255)                                                                                                       cATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCAccc                                     >  2:349047/1‑139 (MQ=255)                                                                                                         tttACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCtt                                   <  1:495701/141‑1 (MQ=255)                                                                                                          ttACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCttt                                  <  2:371178/141‑1 (MQ=255)                                                                                                          ttACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCttt                                  >  1:86652/1‑141 (MQ=255)                                                                                                             cAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACt                               <  1:231530/141‑1 (MQ=255)                                                                                                             cAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCATTACt                               <  2:92033/141‑1 (MQ=255)                                                                                                               aTGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTaa                             <  2:30588/141‑1 (MQ=255)                                                                                                                  aTTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATcc                          >  2:265262/1‑141 (MQ=255)                                                                                                                  aTTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATcc                          >  2:213479/1‑141 (MQ=255)                                                                                                                  aTTGCGTATAGTGATGTGTC‑TTTTTTTGTAAAATCACTTTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATcc                          >  1:343721/1‑141 (MQ=255)                                                                                                                     gCGTATAGTGATGTGTC‑TTTTTTTGTTTTTTTTATCTTCAGACGATTGATCCTCAACAATTTGTTCAAATGCTTCTCGCACTTGTGGTCCTGTCCTAACTACTACAACTTTGATACTATTACTCCTCTTTATTAATCCgtt                       >  2:604372/1‑140 (MQ=255)                                                                                                                     gCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCgtg                       <  1:99649/141‑1 (MQ=255)                                                                                                                       gTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGtgtg                     >  2:124019/1‑141 (MQ=255)                                                                                                                       gTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGtgtg                     <  2:362947/141‑1 (MQ=255)                                                                                                                          taGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCa                  <  1:365764/141‑1 (MQ=255)                                                                                                                          taGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCa                  <  1:214714/141‑1 (MQ=255)                                                                                                                                atgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACTTACTACAGCTTGGATACTCATACCACTCTTTACTAATCCGTGTGCCATttgt             <  2:175898‑M2/130‑1 (MQ=255)                                                                                                                                  gtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATttgttg           <  1:109488‑M2/132‑1 (MQ=255)                                                                                                                                         ttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTg    >  1:347988‑M2/3‑141 (MQ=255)                                                                                                                                         ttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTg    <  2:537518‑M2/139‑1 (MQ=255)                                                                                                                                          tTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGa   <  2:142449‑M2/140‑1 (MQ=255)                                                                                                                                          tTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGa   <  1:579072‑M2/140‑1 (MQ=255)                                                                                                                                           tttGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGaa  >  1:410579/1‑141 (MQ=255)                                                                                                                                           |                                                                                                                                             ACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAA  >  CP000730/2439962‑2440239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.