Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP000730	2086136	2086138	3	2 [0]	[0] 2	USA300HOU_1945/USA300HOU_1946	hypothetical protein/hypothetical protein

TTACTTTTGTTAAAATATATAGGATTTAAATTATTTATTTATGAAGGGTGTGTATTGTTAT  >  CP000730/2086139‑2086199 |                                                             ttACTTTTGTTAAAATATATAGGATTTAAATTATTTATTTATGAAGGGTGTGTATTGttat  <  1:52294/61‑1 (MQ=255) ttACTTTTGTTAAAATATATAGGATTTAAATTATTTATTTATGAAGGGTGTGTATTGttat  >  2:52294/1‑61 (MQ=255) |                                                             TTACTTTTGTTAAAATATATAGGATTTAAATTATTTATTTATGAAGGGTGTGTATTGTTAT  >  CP000730/2086139‑2086199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑