| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 36,315 | 0 | G | A | 55.7% | 39.7 / inf | 476 | Y79Y (TAC→TAT) | tpn | IS431mec transposase |
| Reads supporting (aligned to +/- strand): ref base G (111/94); new base A (132/126); total (249/227) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.74e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 477 total aligned reads displayed.
TGAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATA > CP000730/36169‑36460 | gAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTAc > 2:531835/1‑149 (MQ=32) ggttACCAAAGTGTTTCATTAGACGTTTGATAAACGCATATGCTGGATGATTATCGCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATCGCTCCATTTTCCTTTTATTTTGATGTACGtc < 2:386413/147‑1 (MQ=11) tttACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAGCCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACAGTATAAATAGCTCCATTTTACTTTTATTTTGATATACGtct > 2:485987/1‑149 (MQ=11) aCCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATTAATAGCTCCATTTTCCTTTTATTTTGATGt < 1:999690/140‑1 (MQ=18) aatttgttAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCACCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑t < 2:252638/143‑1 (MQ=12) ttGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TAc > 2:80731/1‑149 (MQ=32) gTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATGTCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGc < 2:472216/149‑1 (MQ=12) gTTTAATGAGACCTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCtca < 1:702421/140‑1 (MQ=18) tttAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATCCGTTTTATCAA‑GACGcc < 2:519490/149‑1 (MQ=11) tttAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGcc < 2:132341/149‑1 (MQ=12) tAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCAt < 2:514970/149‑1 (MQ=17) aTGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCAttt < 2:404986/149‑1 (MQ=12) tGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGATTACGCAACAAAATATCTAATGTATGTCACTCTGCATCAATGGCACGATATAAATAGCGACATTTTCCTTTTATTTTGATGTACGTCTAATCAA‑TAATCCAtttt > 2:42746/1‑148 (MQ=11) gagaCGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCactcgt > 2:437664/1‑144 (MQ=255) agaCGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGta < 2:164459/149‑1 (MQ=12) agaCGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGta < 2:551801/149‑1 (MQ=32) agaCGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTAAGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGTTATAAATAGCTCCTTTTTCCTTTTTTTTTTATGTACGTCTCTTCAT‑TACGCCCTTTGtt > 2:18017/1‑148 (MQ=11) agaCGTGTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTGTCAATGGGACGATATAAATAGGTCCATTTTCCTTTTATTTTGATATACGTTTCATCAC‑TACGCCCTTTGtc > 2:207381/1‑148 (MQ=11) gaCGTTTGCCAAACACGTAGGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGtaa > 2:367114/1‑149 (MQ=11) gaCGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGtaa < 2:232913/149‑1 (MQ=12) aCGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTTCCATCAA‑TACGCCATTTGtaat > 2:174188/1‑149 (MQ=255) aCGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGAACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTCCGTCTCATCAA‑TACGCCATTtatact > 2:553922/1‑147 (MQ=12) tttGAGAAGCGCATATGCTTAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAg < 2:57389/149‑1 (MQ=11) ttGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGc < 2:348741/149‑1 (MQ=25) ttGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCTTCAA‑TACGCCAtat > 1:935840/1‑138 (MQ=18) ttGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGCACGTCTC‑TCAACTACGCCAttc > 1:393222/1‑139 (MQ=11) tGATAAACGCATATGCTGAAGGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGAGGTACGTCTCATCAA‑TACGCCATTTg > 1:610506/1‑140 (MQ=17) aTAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCttt > 2:308530/1‑149 (MQ=255) aTAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCttt < 2:558467/149‑1 (MQ=255) tAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTACCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCtttt > 2:361530/1‑149 (MQ=255) tGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCCTTTGTAATAAGCTTTTTTATGCttct > 2:88382/1‑147 (MQ=255) tcTGAATGATTATCTCGTTGCTGACGCAACCAAACGTCTAATGTATGTCCCTCTGTAGCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATCCGTCTCATCAA‑TTCGCCATTTGTAATAAGCTTTTTTATGCttttt < 2:158704/148‑1 (MQ=14) gCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCttttt > 2:490841/1‑149 (MQ=255) aaTGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTttcttc > 2:340470/1‑149 (MQ=40) aTGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCCCGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTcc < 2:564456/149‑1 (MQ=255) aTGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTcc < 2:2911/149‑1 (MQ=255) ttATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCCTTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAAt > 2:39230/1‑149 (MQ=255) ttATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAAt < 2:7737/149‑1 (MQ=40) tatttggTTGCGTAAGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATTTTCGTCTCATCTA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTTCATAtt > 2:400047/7‑149 (MQ=14) acctcGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGAACGATATAAATCGCTCCATTTTCCTTTTACCTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAAttt < 2:328328/147‑1 (MQ=14) ctcGTTGCTTACGCAACCAAATAACTAAGGTATATCCCTCTGTATCAATGGCACGAGATAAATAACTCCATATTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATACGCTTTTTTATAGTTTTTCTTCCaccgttgt > 2:110498/1‑142 (MQ=11) tcGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCCAATTAGAt > 2:507811/1‑149 (MQ=255) tcGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCAACATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCGTTTGTAATAAGCTTTTTAATGCTTTGTCTTCCACAtttagt > 2:311907/1‑146 (MQ=11) cGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCa > 1:860285/1‑140 (MQ=40) tACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTACATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAAtt > 2:584188/1‑149 (MQ=255) cGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTgg > 2:14916/1‑149 (MQ=255) cGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTAATATAAAATTgg > 2:190571/1‑149 (MQ=255) gCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTggg > 2:527061/1‑149 (MQ=38) gCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTggg > 2:450860/1‑149 (MQ=38) aCCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCa > 2:245669/1‑149 (MQ=255) ttgtccaaTGTATGTCCCTCTGCATAAATGGCACGATATAAATAGCTCTATTTTCCTTTTATTGTGATGTACGTCTCATACA‑TACGCCATTTGTAATAATCTTTTTTATGCTTTTTCTTCCACATTTGATATAAAATTGGGGCATATTc < 2:47654/143‑1 (MQ=11) aaTGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATCCGTCTCATCAA‑TACGCCATTTGTAATAACCTTTTTTATGCTTTTTCTTCCAAATTTTATATAAAATTGGGGCATATTCTTGAAc > 2:125389/1‑149 (MQ=11) atgtatgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAAcc > 2:120764/1‑149 (MQ=255) atgtatgtCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCatat < 1:56474/140‑1 (MQ=255) tgtatgtCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGAATATTCTTGAAccc > 2:498997/1‑149 (MQ=255) gtatgtCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATTCTTTTTCTTCCAAATTTGATACAAAATTAGGGCCTATTc > 1:807400/1‑140 (MQ=255) tatgtCCCTCTGTATCAATGACACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTACGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATAATCTTGAAACCaa > 2:409052/1‑149 (MQ=11) tgtCCCTCTTTATCAAGGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACg < 2:69158/149‑1 (MQ=11) tgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACg < 2:195832/149‑1 (MQ=255) tgtCCCTCTGCATCAATGGCACGATATAAATAGCACCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTGCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACg > 2:70302/1‑149 (MQ=255) cccTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAACCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTa < 2:545262/149‑1 (MQ=255) cccTCTGCATCAATGGCACGATATAAATCGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTTTTCCAAATTTGATACCAAATTGGGGCATATTCTTGAAc > 1:1004717/1‑140 (MQ=255) ccTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCTTCAA‑TACGCCATTTGTAATAAGATTTTTTATGATTTTTCTTCCAAATATCATACAAAATTGGGGGATATTTTTGaaac > 1:464613/1‑138 (MQ=14) ctctGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAGATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGa > 2:301497/1‑149 (MQ=255) gtaTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGTGCATATTCTTGAACCCAACGTTAGATCGt > 2:258668/3‑149 (MQ=11) gtaTCAATGGCACGATATAAAGAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGatagt > 2:536427/3‑145 (MQ=11) tCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGa > 2:46421/1‑149 (MQ=39) aaTGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAat < 2:218510/149‑1 (MQ=21) ggCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatgat > 2:443556/1‑149 (MQ=255) gCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTTTTCTTTTTCTTCCAAAAATGATATAAAATTGAGGCATATTCTTGAACCCAACGTTAGAACGTGGAttcatg > 2:540829/1‑149 (MQ=11) gATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCAAACGGTAGATCGTTGAATGATGAACg > 2:263729/1‑149 (MQ=255) ataAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGTACGtgg < 2:396599/149‑3 (MQ=255) taAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAACATTGGGGCATATTCTTCATCCCCACGGGAGACCGTTGCatgat > 1:270781/1‑140 (MQ=14) taAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTa < 2:278205/149‑1 (MQ=255) aaaTAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTac < 2:324015/149‑1 (MQ=255) aaTAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGTGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGACAGTTTaca > 2:287511/1‑149 (MQ=11) aTAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTacac > 2:271345/1‑149 (MQ=25) tAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTAcacc > 2:43204/1‑149 (MQ=39) tAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacc > 2:24034/1‑149 (MQ=255) gCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGCCATATTCTTGACCCCAACGGTCGATCGTTGAATGATGAACGTTGAcacccc > 2:458862/1‑147 (MQ=11) cTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTTTTTTATTTTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTAAATGATGAACGTCTCcacccag > 2:201503/1‑146 (MQ=11) cTCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACg > 2:116810/1‑149 (MQ=255) tCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGt > 2:304385/1‑149 (MQ=255) tCCATTTTCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACAGTAGATCGTTGAATGATGAACGTTTACACAACGt > 2:169354/1‑149 (MQ=11) tCCATTTTCCGGTTGTTTTGGTTTCTTCCTTATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGt < 2:295401/149‑1 (MQ=11) ccATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGtt > 2:229781/1‑149 (MQ=21) ccATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGtt > 2:482054/1‑149 (MQ=21) ccATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAAACCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGtt > 2:238491/1‑149 (MQ=21) aTTTTCCTGTTATTTTGATATACGTCTCATCAA‑TACGCCAGTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATGTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGCTTACACCACGTTct < 2:331740/149‑2 (MQ=11) tttCCTTTTATATTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCt > 2:453895/1‑149 (MQ=21) tctCCTTTTATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTctct < 2:356766/147‑1 (MQ=11) ttCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt < 2:344493/149‑1 (MQ=21) tttATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTTTTTTATTTTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGTTGAAGGTTTACACCACTTTTTCTtattat > 2:380091/1‑149 (MQ=11) tttATTTTGATATACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAatat < 2:63473/149‑1 (MQ=255) ttcttttGATATACGTCTCATCAA‑TACGCCATATGTAATAAGAATTTAAATAAAATTACGATAACTTGTTTTATAAAATTGGGGCATATTGTGGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATAtt < 2:422335/146‑1 (MQ=2) ttATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATAtt < 2:511843/149‑1 (MQ=40) aTTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAAGTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTc < 2:212862/149‑1 (MQ=25) ttttGTTGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTTTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCTTTGAATGATGAACGTTTACACCACGTTCCCtt < 1:202163/140‑1 (MQ=255) ttGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGa < 2:570677/149‑1 (MQ=18) tGATATACGTTTCATCAA‑TACGCCATTTGGAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGat < 2:597146/149‑1 (MQ=11) | TGAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAA‑TACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATA > CP000730/36169‑36460 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |