New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2508448	43 (1.450)	4 (0.150)	4/276	1.2	8.7%	intergenic (+680/+71)	sarZ/narK	transcriptional regulator/MFS family major facilitator transporter, nitrate:nitrite antiporter
	?	CP000730	= 2508474	44 (1.610)					intergenic (+706/+45)	sarZ/narK	transcriptional regulator/MFS family major facilitator transporter, nitrate:nitrite antiporter
Rejected: Frequency below/above cutoff threshold.

GGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTAAATGACTTGAT  >  CP000730/2508336‑2508624                                                                                                                                             |                                                                                                                                                       ggTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTg                                                                                                                                            <  2:219593/151‑1 (MQ=255) ggTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTg                                                                                                                                            >  2:172992/1‑151 (MQ=255)  gTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGt                                                                                                                                           >  2:307075/1‑151 (MQ=255)     attaACTATTACCTTGCCTAAAATCAAACCAAGCATTGAAACTACTTTATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGCAATGCTACGTATAGT‑GA‑TCATTATATTAAGGCTTCGTAtt                                                                                                                                        >  2:330763/1‑151 (MQ=255)      ttaACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATATCATGCG‑C‑AATATTCGTAGCATGACattaaggctttagtagt                                                                                                                                       >  1:231222‑M2/1‑134 (MQ=255)         aCCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAAc                                                                                                                                    <  2:344841/151‑1 (MQ=255)         aCCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAAc                                                                                                                                    <  2:344840/151‑1 (MQ=255)                     ccTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGc                                                                                                                        >  2:152842/1‑151 (MQ=255)                              aaaCCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTAc                                                                                                               >  1:218924/1‑151 (MQ=255)                               aaccaaccAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGGTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACa                                                                                                              <  1:319536/151‑1 (MQ=255)                                      cAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAAc                                                                                                       >  2:228155/1‑151 (MQ=255)                                        aTGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCg                                                                                                     >  1:327834/1‑151 (MQ=255)                                           aaaCTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGttt                                                                                                  >  1:277917/1‑151 (MQ=255)                                                actTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCaa                                                                                             >  2:207596/1‑151 (MQ=255)                                                          cATCTATTCAAATTTCATAGTTAAATTTAAAATGCATACACTACTAAAGCATTACTGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCCACCGTTTTTCAATGAGCAattt                                                                                   >  2:384981/1‑149 (MQ=255)                                                               aTTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAATCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATCTTAAGGCTTTGTCTTAATCTAAATGCATTGGATGTATTCAGTAAAAACCGTTTTTCAATGAGCCATATTCttt                                                                              >  1:294407/1‑151 (MQ=255)                                                                 tCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCttttt                                                                            >  1:448159/1‑151 (MQ=255)                                                                   cAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTgg                                                                          >  2:98325/1‑151 (MQ=255)                                                                   cAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTgg                                                                          <  2:69854/151‑1 (MQ=255)                                                                   cAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTgg                                                                          <  1:148067/151‑1 (MQ=255)                                                                      tttCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGtat                                                                       >  2:140689/1‑151 (MQ=255)                                                                       ttCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGtata                                                                      >  2:282304/1‑151 (MQ=255)                                                                       ttCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGtata                                                                      <  2:369439/151‑1 (MQ=255)                                                                                   tttAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATgg                                                          >  2:190108/1‑151 (MQ=255)                                                                                     tAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTa                                                        <  2:76390/151‑1 (MQ=255)                                                                                        aaTGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAaat                                                     >  2:3453/1‑151 (MQ=255)                                                                                        aaTGAATACACGACTAAAGCCTTAATGTCATGCTACGAATATT‑CC‑GCATGATATTAAGGCTTTGTATTTAGCTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGCGCCATATTCTTTTTGGTATAAATGACGCATGGTAaat                                                     >  2:376402/1‑151 (MQ=255)                                                                                           gAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAaataat                                                  <  2:137118/151‑1 (MQ=255)                                                                                              tACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCa                                               >  1:391423/1‑151 (MQ=255)                                                                                                cacTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAAt                                             <  1:358073/151‑1 (MQ=255)                                                                                                  ctactaAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTTGTATAAATTACGCATGGTAAATAATGCAATaa                                           >  2:210920/1‑150 (MQ=255)                                                                                                  ctactaAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATAc                                           >  2:416761/1‑151 (MQ=255)                                                                                                   tactaAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACa                                          >  1:398355/1‑151 (MQ=255)                                                                                                     ctaAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATattaaggctttagtagtgtattcattttaaatttaactatgaaattggaatagatgttgatgaagtagtttcattgcttggtttgattttaggcaaggtaatggttaataac                                        <  1:305302‑M2/151‑113 (MQ=255)                                                                                                     ctaAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATc                                        >  1:54958/1‑151 (MQ=255)                                                                                                      taAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATcc                                       >  2:266526/1‑151 (MQ=255)                                                                                                           ccTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATa                                  >  1:268363/1‑151 (MQ=255)                                                                                                           ccTTAATGTCATGATACAAATATT‑AC‑GCATGATATTAAGGCTTTGTATCTAACTAAATGAATGGCATGTATTCCGTATCAACCATTTTTCAATGAGCCATATTCACTTTGGCATAAATGACGCATGGTAACTAATGCAATACATCCAAATa                                  <  2:271672/151‑1 (MQ=255)                                                                                                              tAATGTCATGCTACGAATATT‑GC‑GCATGATattaaggctttagtagtgtattcattttaaatttaactatgaaattggaatagatgttgatgaagtagtttcattgcttggtttgattttaggcaaggtaatggttaataacccattttca                               <  1:37050‑M2/151‑122 (MQ=255)                                                                                                                aTGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCt                             <  1:311700/151‑1 (MQ=255)                                                                                                                   tCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAg                          >  2:49352/1‑151 (MQ=255)                                                                                                                   tCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAg                          <  1:441458/151‑1 (MQ=255)                                                                                                                      tGCTACGAATATT‑GC‑GCATGATattaaggctttagtagtgtattcattttaaatttaactatgaaattggaatagatgttgatgaagtagtttcattgcttggtttgattttaggcaaggtaatggttaataacccattttcaaaactagc                       >  2:37050‑M2/1‑22 (MQ=255)                                                                                                                         tACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATTCATCCAAATACCGCTAAGAaaata                    >  2:40271/1‑151 (MQ=255)                                                                                                                            gAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAaaataaat                 >  2:236513/1‑151 (MQ=255)                                                                                                                                          tGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTAAATGACtt     <  1:282304/151‑1 (MQ=255)                                                                                                                                           gATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTAAATGACTTg    <  1:415473/151‑1 (MQ=255)                                                                                                                                             tatTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTAAATGACTTGAt  >  1:107054/1‑151 (MQ=255)                                                                                                                                             |                                                                                                                                                       GGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCTAAGAAAATAAATGCTAAATGACTTGAT  >  CP000730/2508336‑2508624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.