Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,9180AG62.6% 132.4 / 123.6 139intergenic (‑1001/‑167)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (29/23);  new base G (47/40);  total (76/63)
Fisher's exact test for biased strand distribution p-value = 8.62e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 140 total aligned reads displayed.

AAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCT  >  CP000730/1929771‑1930064
                                                                                                                                                          |                                                                                                                                                  
   gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGc                                                                                                                                                <  1:337606/138‑1 (MQ=255)
    aagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCg                                                                                                                                               >  2:167658/10‑148 (MQ=255)
     agtagatatgCTTGTATATTCACAGATGGTATAATAATAGGTGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                                                                                                                                              <  1:269774/140‑1 (MQ=255)
      gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTT‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGta                                                                                                                                             <  1:26672/141‑2 (MQ=255)
      gtagatatgCTTGTATACTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGta                                                                                                                                             <  2:501112/141‑2 (MQ=255)
       tagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATGGCACCAGTCGTCAGTGGCTGTGCTGTTGCGtat                                                                                                                                            <  1:316497/142‑3 (MQ=255)
        aggtatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGTAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatt                                                                                                                                           <  2:159144/143‑1 (MQ=255)
           tatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATACCACCAGTGATCAGTGGCTGTGCTGTTGCGtattata                                                                                                                                        <  1:407628/146‑7 (MQ=255)
           tatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTT‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattata                                                                                                                                        <  2:40361/146‑7 (MQ=255)
            atgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCCT‑TAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCCCATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGttttatac                                                                                                                                       >  1:27886/2‑144 (MQ=255)
                 tGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAtt                                                                                                                                  <  1:446040/148‑1 (MQ=255)
                 tGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAtt                                                                                                                                  <  1:620686/148‑1 (MQ=255)
                  gtatatccacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTT‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTg                                                                                                                                 <  1:109653/137‑1 (MQ=255)
                  gTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTg                                                                                                                                 <  1:507956/148‑1 (MQ=255)
                   tatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg                                                                                                                                >  1:227717/11‑148 (MQ=255)
                   tataTTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGCTTTTTTCTTATTg                                                                                                                                 >  1:153631/1‑148 (MQ=255)
                   tataTTTGCCGATGATATAATAGTAGAGGCGCCTATCTCTCAGGCGTCAATTGAGACGCAGAGAGGTGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCAGCAGTGGCCGTGCCATTGCGTTTTTTTCTTATTg                                                                                                                                 >  1:382153/1‑148 (MQ=255)
                    caattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                               <  2:439050/139‑1 (MQ=255)
                    atattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                               <  2:172601/139‑1 (MQ=255)
                     tattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                                                                              >  1:199135/9‑148 (MQ=255)
                     tattcacagatgggataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                                                                              <  1:302472/134‑1 (MQ=255)
                      attcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGTCtt                                                                                                                             >  1:166270/8‑147 (MQ=255)
                      atcaacagatggtATAATAATCGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGTGGTG‑CATTAC‑T‑T‑T‑GCTAATCTT‑TTTCGTTTACGTCATAGCACTTGTCATCAGTGGCTGTGCTGTTCCTTATTATACTTATTGGCtt                                                                                                                             <  2:36379/141‑2 (MQ=255)
                        ttGACGATGATAAAATAGTAGAGTCGACTATCTCTCAGGCGTAAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTaa                                                                                                                            <  1:65039/148‑1 (MQ=255)
                         tGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGTCATTGCGTTTTTTTCTTATTGGCTAAg                                                                                                                           <  1:439269/148‑1 (MQ=255)
                         tGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAg                                                                                                                           <  1:131792/148‑1 (MQ=255)
                         cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                          >  1:469780/5‑148 (MQ=255)
                         cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGGG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                          >  1:95466/5‑148 (MQ=255)
                         cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAA‑TTA‑ACGAAGATAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTTTTGGCTTAGt                                                                                                                          >  2:244830/5‑148 (MQ=255)
                          acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                                                                         >  2:581847/4‑148 (MQ=255)
                          acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                                                                         >  1:531112/4‑148 (MQ=255)
                          acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGAGAAA‑TAC‑T‑T‑T‑GCT‑CTTGTGAAACGTTCACATCATAGCACCAGTCATCAGTTGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                                                                         >  1:622083/4‑148 (MQ=255)
                           cagatggtATAATAATAGAGTCGCCTATCTCGCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                                                                                        <  1:422560/146‑2 (MQ=255)
                              atggtATAATAATATAGTCGCCTCTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CAGTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACg                                                                                                                     <  1:50572/148‑1 (MQ=255)
                                ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                                                                   <  2:272632/146‑1 (MQ=255)
                                ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                                                                   >  2:300374/3‑148 (MQ=255)
                                 gtataATATTAGATTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaa                                                                                                                  <  2:309215/147‑1 (MQ=255)
                                 gtataATAATAGAGTCGCCTATCTCTCATGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaa                                                                                                                  >  1:382824/2‑148 (MQ=255)
                                 gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAACCGCaa                                                                                                                  >  2:236395/2‑148 (MQ=255)
                                 gtataATAATAGAGTCGCCGATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTTCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaa                                                                                                                  >  2:243198/2‑148 (MQ=255)
                                  tattatAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACTAAAATAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaac                                                                                                                 <  2:376972/148‑2 (MQ=255)
                                  tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACAAGTCATCAGTGGCGGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaac                                                                                                                 >  1:118394/1‑147 (MQ=255)
                                  tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTGGCGTATTATACTTATTGGCTTAGTAAACGCaac                                                                                                                 <  2:212606/148‑2 (MQ=255)
                                  tataATAATAGAGTCGCCTATCACTCAGGCGTCCATT‑‑GACGAAGAGAGGAGGAG‑CATTAC‑T‑T‑T‑GCTATTCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATCCTTATTGACTTAGTAAAGGCaac                                                                                                                 >  1:345426/1‑147 (MQ=255)
                                   ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGCTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaca                                                                                                                >  2:511353/1‑146 (MQ=255)
                                   ataataataGAGGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTT‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaca                                                                                                                <  2:262499/148‑3 (MQ=255)
                                    taataGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATa                                                                                                                >  1:291438/1‑148 (MQ=255)
                                    gaataatGGAGTCGCCTAGCTGTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                                                                               <  2:127653/147‑4 (MQ=255)
                                    caataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTT‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                                                                               <  1:179600/147‑4 (MQ=255)
                                     aataatAGGGTCTCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTT‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaa                                                                                                              <  2:248623/148‑5 (MQ=255)
                                     aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaa                                                                                                              >  2:354561/1‑144 (MQ=255)
                                      ataatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                                                                                                             >  1:367385/5‑143 (MQ=255)
                                       tagtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTCAGTAGACGCAATACaa                                                                                                             >  2:200883/1‑148 (MQ=255)
                                       taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                                                                                                            <  1:511119/145‑7 (MQ=255)
                                       taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                                                                                                            >  1:487103/4‑142 (MQ=255)
                                        agtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACaaa                                                                                                            <  1:395139/148‑1 (MQ=255)
                                        aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GATAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                                                                                                           >  2:464813/3‑141 (MQ=255)
                                         atagATTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTT‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                                                                          <  2:341843/147‑9 (MQ=255)
                                         atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGTTTAGTAAACGCaaaaaataat                                                                                                          >  1:2505/2‑140 (MQ=255)
                                         atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                                                                          >  1:223447/2‑140 (MQ=255)
                                         atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                                                                          <  1:271899/147‑9 (MQ=255)
                                         atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                                                                          <  1:60655/147‑9 (MQ=255)
                                          tagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAAt                                                                                                          >  1:370838/1‑148 (MQ=255)
                                          tagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTATTATTGGCCAAGAAGACGCCATACaaaaa                                                                                                          >  2:331272/1‑147 (MQ=255)
                                          tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATAAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGGGATGCGGTGACGTATTATACTTATTGGCTTAGTAACCGCaacgaatagtt                                                                                                         >  1:554583/1‑139 (MQ=255)
                                          tagAGTCGCCTATCTCTCAGGCGTCAACT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑T‑TCGCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGCGGCCGTGCTGGTGCGGATTATACCTATTGGCCCAGAAAACGCaacgaagaatt                                                                                                         >  2:389544/1‑139 (MQ=255)
                                          tagAGTCGCCTATCTCTCAGGCGTCAA‑‑TGGACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGAAAACGCaacaaataatt                                                                                                         >  1:173719/1‑139 (MQ=255)
                                          gagagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGcgacaaataatt                                                                                                         >  2:110164/2‑137 (MQ=255)
                                          aagagGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTT‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                                                                         <  2:274172/147‑10 (MQ=255)
                                           agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                                                                                        <  2:198668/148‑11 (MQ=255)
                                             agTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAgg                                                                                                       <  1:391640/148‑1 (MQ=255)
                                             agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGCGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTGAACGCaccaactaattaat                                                                                                      >  1:565995/1‑135 (MQ=255)
                                             agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                                                                      >  2:537067/1‑136 (MQ=255)
                                             agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                                                                      >  2:225320/1‑136 (MQ=255)
                                             agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGGAAACGCaaaaaataattaat                                                                                                      >  2:434525/1‑136 (MQ=255)
                                              gTCGCCTATCTCTCAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAC‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                                     <  1:10915/148‑14 (MQ=255)
                                               tCGCCTGTCTCTCGGGCGTCAAGT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑T‑GCTAATCAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaatag                                                                                                    <  2:72238/148‑15 (MQ=255)
                                                cGCCTACCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGa                                                                                                    <  1:583882/148‑1 (MQ=255)
                                                         ctcAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGcc                                                                                           >  1:359539/1‑148 (MQ=255)
                                                                      tgaGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GAGTCTTAT‑GTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCACACCAATaaaaa                                                                              <  2:564437/146‑1 (MQ=255)
                                                                        aGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATc                                                                            <  1:104148/148‑1 (MQ=255)
                                                                         gACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATcc                                                                           >  2:42579/1‑148 (MQ=255)
                                                                                     aggTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAGAATCCCCTCACTACCGc                                                               <  2:112935/148‑1 (MQ=255)
                                                                                       gtg‑tA‑TAA‑G‑G‑T‑TATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCaa                                                             <  2:613904/148‑1 (MQ=255)
                                                                                         g‑tA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAAt                                                           >  2:38275/1‑148 (MQ=255)
                                                                                                    g‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATCGCCGCACCAGTAAAAATCCCCTCACTACCGCAAATAGTGAgg                                                    >  1:84708/1‑148 (MQ=255)
                                                                                                         aTGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGa                                                 <  2:370838/148‑1 (MQ=255)
                                                                                                           gCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGAtt                                               <  1:188124/148‑1 (MQ=255)
                                                                                                           gCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCCTCTTGGCTCAGTAGACGCAATACAAAATAGGTGACATATATCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTACGGGGAtt                                               >  2:403333/1‑148 (MQ=255)
                                                                                                               tgttgtCGGTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGgt                                            <  2:504943/143‑1 (MQ=255)
                                                                                                                       ttCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGAAGGGGTGTATAAGt                                    >  2:569124/1‑148 (MQ=255)
                                                                                                                        tCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACGAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATGGGTGtatagcga                                   >  1:315542/1‑144 (MQ=255)
                                                                                                                                    aCCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGCGTATAAGTAAATACTTAtttt                       >  1:409794/1‑148 (MQ=255)
                                                                                                                                     ccAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTc                      <  2:528854/148‑1 (MQ=255)
                                                                                                                                      cAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTCAATACTTATTTTCg                     >  1:268780/1‑148 (MQ=255)
                                                                                                                                              aGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTa             <  1:540861/148‑1 (MQ=255)
                                                                                                                                              aGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACACCCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTa             <  1:632224/148‑1 (MQ=255)
                                                                                                                                                        ccATTGCGTTTTTTTTTTTTTTTTTAAGTAGACGCAATACAAAAAAGGTGACATATAGCCGCAGAAATAAAAATGCCCTCCCTCACGCAAATCGTGAGGGGATTGGTTTTTAATTATATACTTATTTTCGTTGTCTTAATTATTCTgt   >  2:455376/1‑147 (MQ=255)
                                                                                                                                                        ccATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGc   <  1:390765/148‑1 (MQ=255)
                                                                                                                                                         cATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCt  <  2:388166/148‑1 (MQ=255)
                                                                                                                                                          |                                                                                                                                                  
AAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑T‑GATGCTTAT‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCT  >  CP000730/1929771‑1930064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑