| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 52495 = | 29 (1.240) | 43 (1.850) +T |
3/278 | 2.9 | 62.9% | intergenic (+105/‑568) | USA300HOU_0043/USA300HOU_0044 | hypothetical membrane protein/possible transcriptional regulator |
| ? | CP000730 | = 52988 | 22 (0.940) | intergenic (+598/‑75) | USA300HOU_0043/USA300HOU_0044 | hypothetical membrane protein/possible transcriptional regulator | |||||
TGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAA > CP000730/52356‑52633 | tgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgcg < 1:248265/141‑1 (MQ=255) aaaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGa > 1:409746/1‑141 (MQ=255) aaaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGa > 1:397413/1‑141 (MQ=255) aGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTATGGAAATAGCGTGAAATAATCAGAGGGGTCGG‑TTGaa‑a > 1:120024/1‑141 (MQ=255) tttttCGCTGAAAATATTTATAGATATAATTCACACTCATTGCGGTTGAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAGATAATCAGAGGAATCGT‑TTGAA‑ATCATCata > 1:341843/1‑141 (MQ=37) gAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATcgcg < 1:124540/141‑1 (MQ=255) aGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGt < 1:250992/141‑1 (MQ=255) gATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTg < 1:197649/141‑1 (MQ=255) taATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATGGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAaat > 1:102057/1‑141 (MQ=255) taATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCGGCGTAGTAATCGCGCGAAAATCACGTGAaat > 1:90003/1‑141 (MQ=255) taaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc > 1:17940/1‑141 (MQ=255) attaattaATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCagag < 1:36277/141‑1 (MQ=255) tcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa > 1:479385‑M1/59‑141 (MQ=255) gcgtgaaataatcagaggaatcgttttaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAat > 1:455615‑M1/57‑141 (MQ=255) aGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAat > 1:473345/1‑141 (MQ=255) aGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAACCGTTTGAAat > 1:265693/1‑141 (MQ=255) gtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTg > 1:29599‑M1/55‑80 (MQ=255) ccAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatca > 1:148041/1‑141 (MQ=255) cAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatcat > 1:198212/1‑141 (MQ=255) gaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCg < 1:441765‑M1/2‑1 (MQ=255) gaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACg < 1:441780‑M1/57‑1 (MQ=255) aGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatcatc > 1:159129/1‑141 (MQ=255) aaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGTAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAA‑TCATCgt > 1:236714‑M1/52‑141 (MQ=255) ataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑atcatc > 1:124739‑M1/50‑83 (MQ=255) tAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgaag > 1:221719/1‑141 (MQ=255) tAATGTAGTCTTAATAGTTGTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGTAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag > 1:370875/1‑141 (MQ=255) agaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCgtagta < 1:272136‑M1/40‑1 (MQ=255) agaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATc > 1:186574‑M1/44‑141 (MQ=255) gaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcg > 1:67697‑M1/43‑141 (MQ=255) aggaatcgtttgaaaatatcgtagtgatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGtaatggc < 1:247866‑M1/100‑4 (MQ=255) ggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag < 1:410223‑M1/93‑1 (MQ=255) ggaatcgtttgaaaacatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg > 1:439968‑M1/41‑141 (MQ=255) gcgatcgtttgaaaacatccttataatcgtgtgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg > 1:425618‑M1/41‑141 (MQ=255) gaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATc < 1:190469‑M1/54‑1 (MQ=255) gaatcgtatgaaatcatcgtagtactcgggcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTgaaatcatcgtaggactggcgc < 1:315086‑M1/102‑10 (MQ=255) aatcgtttgaaaacatcctagaaatcgcgcgaaaatcaCGTGAAATAATCAG‑‑GAATCGTGTTGTATATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg > 1:488710‑M1/39‑141 (MQ=255) tAATCGTGCTGAAATACGAACAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGACGAAAACGTGAAATAATCAGAGGAATCGTTTGAAATCATAGTAGTAATCGCGCGa > 1:311499/1‑141 (MQ=17) atcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATcgcg > 1:39190‑M1/38‑83 (MQ=255) cgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGt‑t > 1:139675‑M1/36‑59 (MQ=255) cgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑atc < 1:28738‑M1/31‑1 (MQ=255) cgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt > 1:2679‑M1/36‑114 (MQ=255) gtgttaaatcaacgtagtaatcgcgcgaaaatcaCGGGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa > 1:226762‑M1/35‑141 (MQ=255) tttgaaatcatcgtaataatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt > 1:16323‑M1/34‑141 (MQ=255) cGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCCCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTCGTAATCGCGCGaaatt > 1:70083/1‑139 (MQ=255) cGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaaa > 1:125390/1‑140 (MQ=255) gaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGaa < 1:246345‑M1/50‑1 (MQ=255) aatcatcctagtaatcgcgtgaaaatcaCGTGAAACAATCAACGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt > 1:464111‑M1/29‑141 (MQ=255) tcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt < 1:191858‑M1/79‑1 (MQ=255) aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa > 1:139293/1‑141 (MQ=255) aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa > 1:465766/1‑141 (MQ=255) aatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa > 1:470207‑M1/26‑141 (MQ=255) aaTACGAAAAATGTTGTGGAAATCGCGTGAAAAGATCAGAGGAATCGG‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACTTGaa < 1:337558/141‑1 (MQ=255) atcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATcgc > 1:477522‑M1/25‑69 (MQ=255) gtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCg > 1:370579‑M1/22‑43 (MQ=255) aaaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGTCTTATACGTGAAATAATCTGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCG‑AAATCACGTGAAATAATCag < 1:490900/141‑1 (MQ=14) aatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑atc < 1:156769‑M1/31‑1 (MQ=255) aatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatc < 1:472631‑M1/86‑1 (MQ=255) aatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga > 1:313275‑M1/17‑141 (MQ=255) gttgtGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGa > 1:343131/1‑141 (MQ=38) ttgtGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGCAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGGGCGAATATCACGTGAAATAATCAGAGGaa > 1:429965/1‑141 (MQ=255) gcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt < 1:316453‑M1/80‑1 (MQ=255) gAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt < 1:417787/141‑1 (MQ=33) aaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCa < 1:432164‑M1/55‑1 (MQ=255) aaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt < 1:405343‑M1/80‑1 (MQ=255) aaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGATATAATCAGAGGAATCGttt > 1:297472‑M1/7‑141 (MQ=255) aatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgc < 1:242738‑M1/102‑1 (MQ=255) aatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAACGCGCGAAAATCACGTAAAATAATCAGAGGAAtcgtgtg < 1:459298‑M1/136‑4 (MQ=255) aatcaCGGGAAATAACCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg > 1:72971‑M1/6‑141 (MQ=255) atcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGa > 1:470941‑M1/5‑141 (MQ=255) tcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATTGCGCGAAAATc < 1:428823‑M1/54‑1 (MQ=255) tcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCa < 1:329954‑M1/68‑1 (MQ=255) caCGTGAAATAATCAGAGGCATCGT‑GTGAA‑ATCATCGTAGTAATAGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaaa < 1:271867‑M1/139‑1 (MQ=255) aCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt < 1:43482‑M1/80‑1 (MQ=255) | TGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAA > CP000730/52356‑52633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |