New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1283492	42 (0.640)	3 (0.050)	3/236	NT	6.8%	coding (51/4311 nt)	dnaE1	DNA‑directed DNA polymerase III alpha subunit
	?	CP000730	= 1283506	44 (0.740)					coding (65/4311 nt)	dnaE1	DNA‑directed DNA polymerase III alpha subunit

AAAGCATTTAATTTTCTATCATTACTATGCTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1283344‑1283492 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaaaatttcaGCATCTAATTGATTTGAAATTTTAATTTGATCAGCAAGCACTTTAAATTTTTGTTGCTCTGTCATTGCCAAGACAATTACCACCTTAAATAGAAATTACTTTTACGTGTTCGAACAATATTTAGATTATGTGAGCATAGT  <  CP000730/1283506‑1283367                                                                                                                                                                                                                                                                                                   AAAGCATTTAATTTTCTATCATTACTATGCTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTA                                                                                                                                                      >  2:337655/1‑141    GCATTTAATTTTCTATCATTACTATGCTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAA                                                                                                                                                   >  2:159473/1‑141      ATTTAATTTTCTATCATTACTATGCTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATT                                                                                                                                                 <  2:749673/141‑1        TTAATTTTCTATCATTACTATGCTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTC                                                                                                                                               <  1:205473/141‑1        TTAATTTTCTATCATCACTATGCTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTC                                                                                                                                               <  1:651447/141‑1                                  CATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAATTTAAAATTTCAGCATCTAATTGATTTGAAATTTTAA                                                                                                                     <  1:40626/141‑1                                                                                                           GCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAGCATCTAATTGATTTGAAATTT                                                                                                                        >  1:586225/1‑65                                                                                                           GCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAGCATCTAATTGATTTGAAATTT                                                                                                                        <  2:586225/65‑1                                                                                                                                            TAAAATTTCAGCATCTAATTGATTTGAAATTTTAATTTGATCAGCAAGCACTTTAAATTTTTGTTGCTCTGTCATTGCCAAGACAATTACCACCTTAAATAGAAATTACTTTTACGTGTTCGAACAATATTTAGATTATGT           >  1:583665/1‑141                                                                                                                                              AAATTTCAGCATCTAATTGATTTGAAATTTTAATTTGATCAGCAAGCACTTTAAATTTTTGTTGCTCTGTCATTGCCAAGACAATTACCACCTTAAATAGAAATTACTTTTACGTGTTCGAACAATATTTAGATTATGTGA         >  1:245290/1‑141                                                                                                                                               AATTTCAGCATCTAATTGATTTGAAATTTTAATTTGATCAGCAAGCACTTTAAATTTTTGTTGCTCTGTCATTGCCAAGACAATTACCACCTTAAATAGAAATTACTTTTACGTGTTCGAACAATATTTAGATTATGTGAG        <  2:322058/141‑1                                                                                                                                                ATTTCAGCATCTAATTGATTTGAAATTTTAATTTGATCAGCAAGCACTTTAAATTTTTGTTGCTCTGTCATTGCCAAGACAATTACCACCTTAAATAGAAATTACTTTTACGTGTTCGAACAATATTTAGATTATGTGAGC       >  2:32003/1‑141                                                                                                                                                 TTTCAGCATCTAATTGATTTGAAATTTTAATTTGATCAGCAAGCACTTTAAATTTTTGTTGCTCTGTCATTGCCAAGACAATTACCACCTTAAATAGAAATTACTTTTACGTGTTCGAACAATATTTAGATTATGTGAGCA      <  1:131277/141‑1                                                                                                                                                 TTTCAGCATCGAATTGATTTGAAATTTTAATTTGATCAGCAAGCACTTTAAATTTTTGTTGCTCTGTCATTGACAAGACAATTACCACCTTAAATAGAAATTACTTTTACGTGTTCGAACAATATTTAGATTATGTGAGCA      <  1:714736/141‑1                                                                                                                                                   TCAGCATCTAATTGATTTGAAATTTTAATTTGATCAGCAAGCACTTTAAATTTTTGTTGCTCTGTCATTGCCAAGACAATTACCACCTTAAATAGAAATTACTTTTACGTGTTCGAACAATATTTAGATTATGTGAGCATA    >  1:320940/1‑141                                                                                                                                                     AGCATCTAATTGATTTGAAATTTTAATTTGATCAGCAAGCACTTTAAATTTTTGTTGCTCTGTCATTGCCAAGACAATTACCACCTTAAATAGAAATTACTTTTACGTGTTCGAACAATATTTAGATTATGTGAGCATAGT  >  2:107001/1‑141                                                                                                                                                                                                                                                                                                   AAAGCATTTAATTTTCTATCATTACTATGCTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1283344‑1283492 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaaaatttcaGCATCTAATTGATTTGAAATTTTAATTTGATCAGCAAGCACTTTAAATTTTTGTTGCTCTGTCATTGCCAAGACAATTACCACCTTAAATAGAAATTACTTTTACGTGTTCGAACAATATTTAGATTATGTGAGCATAGT  <  CP000730/1283506‑1283367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.