| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2121978 | 0 (0.000) | 6 (0.100) | 4/244 | NT | 100% | coding (132/177 nt) | USA300HOU_1999 | hypothetical bacteriophage protein |
| ? | CP000730 | = 2122008 | NA (NA) | coding (102/177 nt) | USA300HOU_1999 | hypothetical bacteriophage protein | |||||
CATCATTTATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2121834‑2121978‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagttaCCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATGAT < CP000730/2122008‑2121869 CATCATTTATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACA > 1:511915/1‑141 ATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTACCAAGCTGACAAGGTAGGACTTGCCAGTGAT < 2:401958/141‑1 ATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTACCAAGCTGACAAGGTAGGACTTGCCAGTGAT < 2:401941/141‑1 TCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTACCAAGCTGACAAGGTAGGACTTGCCAGTGATA < 1:693361/141‑1 TTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTTCCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGT < 1:568184/141‑1 TTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCA < 2:562115/141‑1 TTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCA < 2:168122/141‑1 CAGTTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAAC < 1:127358/141‑1 TTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATG > 1:188205/1‑141 ACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATGAT > 2:350764/1‑141 ACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATGAT > 1:391074/1‑141 CATCATTTATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2121834‑2121978‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagttaCCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATGAT < CP000730/2122008‑2121869 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |