Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,8610TC76.1% 877.8 / 217.3 452intergenic (‑944/‑224)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (67/40);  new base C (186/154);  total (256/196)
Fisher's exact test for biased strand distribution p-value = 1.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 456 total aligned reads displayed.

TTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCG  >  CP000730/1929714‑1930002
                                                                                                                                                   |                                                                                                                                                  
tcgTCCAATAAAGTGTAGACGATTACATCTATCAGCTAAAATCATATAACTTATCAGAAGCAAGTAACTGTGCTTCTATATTTGCCGATGATATAATAGTTGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGgtgt                                                                                                                                                    <  2:810161/146‑1 (MQ=255)
 tGTCCAATTAAGTGTAGACGATTCAATCTATAAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGgtgtt                                                                                                                                                   >  1:911389/1‑147 (MQ=255)
         tAAGTGTAGACGATTCAATCGATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGa                                                                                                                                       <  2:1133634/148‑1 (MQ=255)
                aGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTAt                                                                                                                                >  1:150492/1‑148 (MQ=255)
                   cGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGGGTA‑TAA‑G‑G‑TGATGCTTAtttt                                                                                                                             >  2:745284/1‑148 (MQ=255)
                      ttCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTACACGAATAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGt                                                                                                                          <  1:1046374/148‑1 (MQ=255)
                                         tCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGAGATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGtc                                                                                                       >  1:363395/1‑148 (MQ=255)
                                                   tATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCt                                                                                            <  1:125439/148‑1 (MQ=255)
                                                         tcggaagtagatgtgCTTGTATATTCACAGATGGTAGAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGctgt                                                                                     <  2:275555/137‑4 (MQ=255)
                                                         aaGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TCA‑G‑G‑GGAGGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGccc                                                                                      >  1:969423/1‑147 (MQ=255)
                                                              agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGt                                                                                <  1:179174/140‑1 (MQ=255)
                                                              agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGt                                                                                <  1:881499/140‑1 (MQ=255)
                                                               gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGta                                                                               <  1:809794/141‑2 (MQ=255)
                                                                 agatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtatt                                                                             >  1:442807/6‑148 (MQ=255)
                                                                  ggaatgCGTGTATATTCACTGAAGGTATAACAATAGAATCGCCTATCTCGCAGTCGTCAA‑‑TGGACGAAGCGAGGGGGTGCATTAC‑C‑T‑TGCTAATCATTTTCGTCCACATCACAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtatta                                                                            <  2:149/144‑2 (MQ=255)
                                                                    tatgattGTATATTCCCAGATGGTATAATAATAGAGCCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtattata                                                                          <  1:101923/143‑7 (MQ=255)
                                                                     atgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtattatac                                                                         >  1:324625/2‑144 (MQ=255)
                                                                      tgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtattatact                                                                        <  2:952459/148‑9 (MQ=255)
                                                                       gCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCt                                                                        <  2:1004300/148‑1 (MQ=255)
                                                                       gCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtattatactt                                                                       <  1:792440/148‑10 (MQ=255)
                                                                       gCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCG‑AAATATTG‑TGAATATAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtattatactt                                                                       <  1:1228900/148‑10 (MQ=255)
                                                                       gCTTGTATATGCACAGAGGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGGGCATTAC‑T‑T‑TGCGACCCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACtt                                                                       <  1:1173139/148‑1 (MQ=255)
                                                                        cTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtattatactta                                                                      <  1:714890/148‑11 (MQ=255)
                                                                         ttGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGtattatacttat                                                                     <  1:1106449/148‑12 (MQ=255)
                                                                         ttGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTAGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTAt                                                                     >  2:532836/1‑148 (MQ=255)
                                                                          tGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTAtt                                                                    <  2:504133/148‑1 (MQ=255)
                                                                           ttataCTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGAG‑GCTATGCCATTGCGTTTTTTTCTTAtt                                                                    <  1:641384/147‑1 (MQ=255)
                                                                           gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGGGGTGAC‑TTACT‑T‑TGCTAATAATTTTCGTTCACATCATACCACCAGTCATCAGTT‑GCTGTGCTGTTGCGTATTATACTTATTg                                                                   >  2:441618/12‑148 (MQ=255)
                                                                           gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTg                                                                   >  2:579255/12‑148 (MQ=255)
                                                                            tatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTgg                                                                  >  1:13912/11‑148 (MQ=255)
                                                                            tatattcacagatggtATAATAATAGAATCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCTGGG‑GCTGTGCTGTTGCGTATTATACTTATTgg                                                                  >  2:874656/11‑148 (MQ=255)
                                                                             atattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGc                                                                 >  1:512773/10‑148 (MQ=255)
                                                                               attcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCGTTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCtt                                                               >  1:287168/8‑147 (MQ=255)
                                                                               attcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCtt                                                               <  1:61237/141‑2 (MQ=255)
                                                                                 ttGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTaa                                                              >  1:630461/1‑148 (MQ=255)
                                                                                 ttGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCAGAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTaa                                                              >  2:851925/1‑148 (MQ=255)
                                                                                  cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                            >  1:707125/5‑148 (MQ=255)
                                                                                  cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                            >  1:249551/5‑148 (MQ=255)
                                                                                   acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                           >  2:606819/4‑148 (MQ=255)
                                                                                    ccGATGGTATAATAATAGAGTCGCCTACCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                          <  1:624482/148‑2 (MQ=255)
                                                                                    cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                          >  1:1191531/3‑147 (MQ=255)
                                                                                    cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                          >  2:97425/3‑147 (MQ=255)
                                                                                    cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                          >  1:538148/3‑147 (MQ=255)
                                                                                    cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                          <  1:947176/146‑2 (MQ=255)
                                                                                    cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACAGCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                          <  2:773645/146‑2 (MQ=255)
                                                                                     cGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAg                                                          >  2:917343/1‑148 (MQ=255)
                                                                                     agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                         >  1:189485/2‑146 (MQ=255)
                                                                                     agatggtATAATAATAGAGTCGCCTATCCCTCAGGCGGCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                                         <  1:410398/147‑3 (MQ=255)
                                                                                      gatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAAc                                                        >  1:397814/1‑148 (MQ=255)
                                                                                        tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                      <  1:68116/145‑1 (MQ=255)
                                                                                        tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                      <  1:55088/145‑1 (MQ=255)
                                                                                        tggtataAGAATGGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                      <  2:174141/145‑1 (MQ=255)
                                                                                        tgatATAATAGTAGAGTCGCCTATCTGTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTGGACg                                                       >  1:661267/1‑148 (MQ=255)
                                                                                         ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                     <  1:1147900/146‑1 (MQ=255)
                                                                                         ggtataATAAGTGAGGCGCCTAGCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAAACATTTTCGTTCACATCATAGCACCAGTCACCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                     <  2:228471/146‑1 (MQ=255)
                                                                                          atatAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑CAA‑G‑G‑TGATGCTTATTTTAGTTCACTTCATACCACTAGTCATCAGTG‑GCTTTGCCATCGCGTTTTTTTCTTATTTGCTAAGTAGACGCa                                                     >  2:724104/1‑148 (MQ=255)
                                                                                          atatAATAGTAGAGTCGCCTATCTCTCAGGCGACCATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATACTGATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGGTTTTTCCTCATTGGCTACGTAGACGcc                                                     >  2:386759/1‑147 (MQ=255)
                                                                                           tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GATGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaac                                                   <  2:168459/148‑2 (MQ=255)
                                                                                           tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaac                                                   <  2:250225/148‑2 (MQ=255)
                                                                                            ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaca                                                  >  1:769166/1‑146 (MQ=255)
                                                                                             taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                 <  2:756107/148‑4 (MQ=255)
                                                                                             taataaTAGAGGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTAACATCATAGCACCACTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                 <  2:380243/148‑4 (MQ=255)
                                                                                             taagaatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTCCACATCATAGCACCCGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                 <  2:345112/142‑4 (MQ=255)
                                                                                                taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                                              >  2:861253/4‑142 (MQ=255)
                                                                                                taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                                              >  2:1205941/4‑142 (MQ=255)
                                                                                                taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GACGTCCTTTTGCGTATTATACTTATTGGCTTCGTAACCGCaacaaata                                              >  2:464341/4‑142 (MQ=255)
                                                                                                taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                                              <  2:330291/145‑7 (MQ=255)
                                                                                                 aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTTCGTATTATACTTATTGGCTTAGTAAACGCaacaaatat                                             >  2:610836/3‑141 (MQ=255)
                                                                                                 aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAAACATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                                             >  2:841127/3‑141 (MQ=255)
                                                                                                 aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGAGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTACGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                                             >  1:428915/3‑141 (MQ=255)
                                                                                                  atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                            >  2:900319/2‑140 (MQ=255)
                                                                                                  atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCAACACATAAt                                            >  2:982378/2‑148 (MQ=255)
                                                                                                  atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GTTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                            <  1:351625/147‑9 (MQ=255)
                                                                                                   tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                           >  1:1003038/1‑139 (MQ=255)
                                                                                                   tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                           >  2:1245453/1‑139 (MQ=255)
                                                                                                   tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                           <  1:1132015/148‑10 (MQ=255)
                                                                                                    agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTTCA‑TGACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTGTTATACTTATTGGCTTAGTAAACGCaacaaataatta                                          >  2:206715/1‑138 (MQ=255)
                                                                                                    agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTACTCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTGGTAAACGCaaaaaataattt                                          >  2:673869/1‑138 (MQ=255)
                                                                                                    agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaatgattt                                          >  2:308008/1‑138 (MQ=255)
                                                                                                    agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                          >  2:1008817/1‑138 (MQ=255)
                                                                                                    agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                          >  1:1027314/1‑138 (MQ=255)
                                                                                                      agTCGCCTATCTCTCAGGCGTCACTT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                        >  1:742502/1‑136 (MQ=255)
                                                                                                      agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TTCTAATCATTTTCGTTGTCATCATAGCACCAGTCATCAGTG‑GCTGTGATGTTGCGTATTGGACGTATTGTCTTAGTAAACGCaacaaatagttaat                                        >  2:447031/1‑136 (MQ=255)
                                                                                                      agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                        >  2:1031279/1‑136 (MQ=255)
                                                                                                      agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                        >  2:395947/1‑136 (MQ=255)
                                                                                                      agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                        >  2:1159876/1‑136 (MQ=255)
                                                                                                       gTCGCCTATCTCTGAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                       >  2:688943/1‑135 (MQ=255)
                                                                                                       gTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGt                                        <  1:861395/148‑1 (MQ=255)
                                                                                                       gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGTTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                       >  1:304603/1‑135 (MQ=255)
                                                                                                       gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTGATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                       >  1:842348/1‑135 (MQ=255)
                                                                                                       gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTGAACGCaacaaataattacta                                       >  1:392665/1‑135 (MQ=255)
                                                                                                       gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                       >  2:103887/1‑135 (MQ=255)
                                                                                                       gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                       >  1:221401/1‑135 (MQ=255)
                                                                                                       gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACAAG‑CATTAGGGTGCTGGTCTGTTGCGTATTATACTTATTGGCTTAGTAGACGCaacaaataattacta                                       >  1:591793/1‑135 (MQ=255)
                                                                                                                    cAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGc                           >  2:1068707/1‑148 (MQ=255)
                                                                                                                     aGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCa                          <  2:1117021/148‑1 (MQ=255)
                                                                                                                          tCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATAAAAAATAGCTGACATATAGCCGCACCAAt                     >  2:1193630/1‑148 (MQ=255)
                                                                                                                                   aCGCAGAGGGGAGTTTTA‑TAA‑G‑G‑TGATGCTTAGTTCCGTTCACATCAGAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATccc            <  1:474670/148‑1 (MQ=255)
                                                                                                                                     gCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCt          >  2:537092/1‑148 (MQ=255)
                                                                                                                                     gCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCGTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCt          <  2:1097488/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
TTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTG‑GCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCG  >  CP000730/1929714‑1930002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑