Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0009133,287,2970A→.100.0% 3.0 3intergenic (+272/‑129)agaI/yraHgalactosamine‑6‑phosphate isomerase/putative fimbrial‑like adhesin protein
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (1/1):  ref base (0/1):  total (1/2)

AATTAACTTATGTAACAGTCACGCATTATATTAAATAACATTTGACTGGGTTGAACATAACGCCGATAGCAAAAGGAGTTATGTTCAACAATTTAATTTTAGATATACATATAACTTGTTCTATTAATAAATCACCTCGTATTCTGACTCGCCCCCTGGCGCAGCAAAGTCAGGCATTTATACTCTTTTGAATACATAGAAAATTGATATCAATATAATGAAAATATCAAATATTTGCATATAAATATAATCTTAAAGTTCAGTCTATTTAATGTTCAATGAAATATTTCTGCCTGTATAATCTTTAAAGATGTTGAACATATATTCACATTAAATATGAT  >  NC_000913/3287055‑3287395
                                                                                                                                                                                                                                                  |                                                                                                  
aaTTAACTTATGTAACAGGTAAGCATTATATTAAATTACATTTGACTGGGTTGAAAATAAAGCCGAAAGCAAAAGGAGGTATGTTCAACAATTTAATTTTAGATATACATATAACTTGTGCTATGAATAAATCACCTCGTATGCTTACTCGCCCCCTGGCGCAGCAAAGTCAGGCATTTATACTCTTTTGAATACATAGAACATTGATATCAACATAATGAAAATCTCAAATATTTGCATATAAATATAATCTTACAGTTCAGTCTATTTAATGTTCAATGAAATATTTCTGCCTGTATaa                                          <  1:161248/301‑1 (MQ=255)
                                                                                                                                                                                                                      ataATGAAAATATCAAATATTTGCATAT‑AATATAATCTTAAAGTTCAGTCTATTTAATGTTCAATGAAATATTTCTGCCTGTATAATCTTTAAAGATGTTGAACATATATTCACATTAAATATGAt  <  1:532368/126‑1 (MQ=255)
                                                                                                                                                                                                                      ataATGAAAATATCAAATATTTGCATAT‑AATATAATCTTAAAGTTCAGTCTATTTAATGTTCAATGAAATATTTCTGCCTGTATAATCTTTAAAGATGTTGAACATATATTCACATTAAATATGAt  >  2:532378/1‑126 (MQ=255)
                                                                                                                                                                                                                                                  |                                                                                                  
AATTAACTTATGTAACAGTCACGCATTATATTAAATAACATTTGACTGGGTTGAACATAACGCCGATAGCAAAAGGAGTTATGTTCAACAATTTAATTTTAGATATACATATAACTTGTTCTATTAATAAATCACCTCGTATTCTGACTCGCCCCCTGGCGCAGCAAAGTCAGGCATTTATACTCTTTTGAATACATAGAAAATTGATATCAATATAATGAAAATATCAAATATTTGCATATAAATATAATCTTAAAGTTCAGTCTATTTAATGTTCAATGAAATATTTCTGCCTGTATAATCTTTAAAGATGTTGAACATATATTCACATTAAATATGAT  >  NC_000913/3287055‑3287395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.