Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_000913	4,038,403	0	C→A	100.0%	2.6	3	noncoding (885/2905 nt)	rrlA	23S ribosomal RNA of rrnA operon
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (0/2):  ref base (0/1):  total (0/3)

TCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAAC‑AACCCAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT  >  NC_000913/4038390‑4038695              |                                                                                                                                                                                                                                                                                                      ccGGCAAGGGGGTCATCCCGACTTACCCACCCTATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAAC‑AACCCAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAAGCCCAGACAGCCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGacac       <  1:624071/300‑1 (MQ=11)    acAAGAGGGTAAGCCCGACTAACCAACCCGATGAAAACTTAGAATCCCGGAGAATGTTATCACGGCACACACACGGCGGGTGCGAACGTCCGTCGTTAAGAGGGAAACGAACCCAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGCGGGAAACGATGGTGGAAGGCCCAGACAGCCAGGATGTTGTCTTAGAAGCAGTCATCATTTAAAGAAAGCGTAATAGCACACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGAACCGAAGCTGCGGCAGCGACACTa     <  1:558764/300‑1 (MQ=11)      acgggggTAATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTCGCACGGGAGAGAAACGGCGGGGGCGAACGTCCGTCGTGAAGAGGGAAAC‑AACCCAGACCGACAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTAtgt  <  1:947646/299‑1 (MQ=255)              |                                                                                                                                                                                                                                                                                                      TCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAAC‑AACCCAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT  >  NC_000913/4038390‑4038695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.