Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2469148	2469769	622	11 [10]	[10] 11	gtrS	serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage

ATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAA‑CCAAAAAAC‑GCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACC  >  NC_000913/2468848‑2469261                                                                                                                                                                                                                                                                                                              |                                                                                                                   aTTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAA‑CCCAAAAACAGCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATaaa                                                                                                                    >  1:263285/1‑301 (MQ=255)       cACGTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTATTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAA‑CCAAAAAAC‑GCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATc                                                                                                              <  1:369624/300‑1 (MQ=255)                   ttACAAGCGTTGACAAAGTCATTCTTCTAATCTGGATCTACATAGGGTTTGTGGTATCCAGTTGAGTATTTATTTGTGGTGCGTGGATGATTTTAGATACTATCATATTTGGGAATGCTGGTAGGGGTTATCTTTCAATACTTGTTTCAATACTTGTTTTAGGTGGAAGTCAGATGATTGGAATAGGATTATTAGGTGAATATATTGGACGCACATACATTGAAA‑CCAAAAAAC‑GCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCt                                                                                                 <  2:363556/301‑1 (MQ=255)                                                         tacataGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAA‑CCAAAAAAC‑GCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATACAAGTATCATTg                                                                                                          >  2:303926/1‑254 (MQ=255)                                                                                                              tttAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGGTTCAATACTGTTTTTAGGTGGAATTCAGATGATGGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAACCCAAAAAAC‑GCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGAc       <  2:263290/301‑1 (MQ=255)                                                                                                                                                                                        gAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAA‑CCAAAAAAC‑GCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGt                                                                                                                 <  1:108089/120‑1 (MQ=255)                                                                                                                                                                                        gAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGAAGCAAATGCATTGAAA‑CCAAAAAAC‑GCCCGATATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGt                                                                                                                 >  2:108089/1‑120 (MQ=255)                                                                                                                                                                                                                                      cacaTACATTGAAA‑CCAAAAAAC‑GCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGtatat                                                                                                     <  1:332672/86‑1 (MQ=255)                                                                                                                                                                                                                                      cacaTACATTGAAA‑CCAAAAAAC‑GCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGtatat                                                                                                     >  2:332680/1‑86 (MQ=255)                                                                                                                                                                                                                                                             c‑GCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATAcc  >  1:360396/1‑163 (MQ=255)                                                                                                                                                                                                                                                             c‑GCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATAcc  <  2:360405/163‑1 (MQ=255)                                                                                                                                                                                                                                                                                                              |                                                                                                                   ATTTAGCACTTGAGGGTATTACAAGCTTTTCCACATTCCCTCTTCGCATCTGGACATACATAGGGTTAGTGGTAGCCAGTGTAGCATTTATTTATGGGGCGTGGATGATTTTAGATACTATCATATTTGGAAATGCTGTTAGGGGATATCCTTCACTACTTGTTTCAATACTGTTTTTAGGTGGAATTCAGATGATTGGAATAGGAGTATTAGGTGAATATATTGGACGCACATACATTGAAA‑CCAAAAAAC‑GCCCGAAATACATCATCAAGAGAGTCAAAAAATGAATAAAGCAATAAAAGTATCATTGTATATATCTTTTGTTTTGATTATTTGCGCCTTATCTAAAAACATAATGATGTTAAATACATCTGATTTCGGAAGAGCCATTAAGCCATTAATTGAAGACATACC  >  NC_000913/2468848‑2469261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.