New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3781125184 (1.560)3 (0.030) 3/290 13.2 1.7% intergenic (+108/‑90) lldD/trmL L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
?NC_000913 = 3781138 179 (1.570)intergenic (+121/‑77) lldD/trmL L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Rejected: Position hash score below cutoff.

Only 100 of 185 total aligned reads displayed.

CAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATATCATCGAACCGATGG  >  NC_000913/3780940‑3781320
                                                                                                                                                                                             |                                                                                                                                                                                                         
cAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGgag                                                                                                                                                                                           <  1:581410/200‑1 (MQ=255)
            gTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTg                                                                                                                                                                              >  1:536189/1‑200 (MQ=255)
                       gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑gggg                                                                                                                                                                                <  1:69040/187‑1 (MQ=255)
                       gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAgg                                                                                                                                                                >  1:311651/1‑200 (MQ=255)
                                            aCTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTTTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTc                                                                                                                                           >  1:554384/1‑200 (MQ=255)
                                                    ccAGGGAGAAAGGGAGTGCGGCATGTTCTTTGCCCCCCCCTCACCCAACCCCTCTCCCTCGGGGAGGGGGGCCG‑GTGGGGCTTTTTATGT‑CCCCCCTCCCTCAAAACC‑CCCACCCCATTTTTTTTTTCC‑CCCCCCCCCCGC‑G‑GGGGAGGGGGCG‑GGGGGGGGGG‑‑A‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATcc                                                                                                                                   <  1:687976/200‑1 (MQ=255)
                                                           gAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGgag                                                                                                                                                                                           <  2:40586/141‑1 (MQ=255)
                                                           gAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGgag                                                                                                                                                                                           <  2:240252/141‑1 (MQ=255)
                                                              aGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGCGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTCAAAC‑GACACCGCACTCTTTTTTGCT‑CCCTCGCCCCTc‑c                                                                                                                                                                                                  >  3:233539/1‑132 (MQ=255)
                                                              aGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTc‑c                                                                                                                                                                                                  >  3:265934/1‑132 (MQ=255)
                                                              aGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAgg                                                                                                                                                                                        >  2:694155/1‑141 (MQ=255)
                                                              aGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAgg                                                                                                                                                                                        >  2:203205/1‑141 (MQ=255)
                                                               gggAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAggg                                                                                                                                                                                       <  2:736649/141‑1 (MQ=255)
                                                                gagacgcgggaatggtttttGCCCCCCCCCCCCCCAACCCCCCCCCCCGGGGGGGGGGGGCC‑‑TTCGGGGCTTTGTATGACCCCCCCACCCTTAAAC‑CACACCCCCCTTTTTTTTTCC‑CCCCCCCCCCCC‑C‑GGGGGGGGGGCG‑GGGGGGGGGG‑‑GAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                                                                                        <  1:203474/183‑1 (MQ=255)
                                                                gaaagggggatgttggggttGCCCCCCCCCCCCCCAACCCCCACCCCCGGGGAGGGGGGACCTGTGCGGGGTTTTAT‑T‑ACCCCCCTCCTCTAAAACAAACCCCCCATTTTTTTTTCCC‑CCCGCCCCCCTC‑G‑GGGGGGGGGGGG‑GGGGGGGGGG‑‑A‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                                                                                        <  1:903099/182‑1 (MQ=255)
                                                                 gAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGcc                                                                                                                                                                                     >  2:806149/1‑141 (MQ=255)
                                                                      cGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGt                                                                                                                                                                               <  2:502793/141‑1 (MQ=255)
                                                                        gCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAggg                                                                                                                                                                                       >  3:508709/1‑132 (MQ=255)
                                                                        gCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAggg                                                                                                                                                                                       >  3:79125/1‑132 (MQ=255)
                                                                           tAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGagagagagaaaaaaagag                                                                                                                                                                           <  2:374314/141‑15 (MQ=255)
                                                                                 tttGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑TCTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                                                                                      >  1:561975/1‑200 (MQ=255)
                                                                                         cccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑aaaa                                                                                                                                                                  >  3:720761/1‑132 (MQ=255)
                                                                                         cccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCaa                                                                                                                                                >  4:671528/1‑150 (MQ=255)
                                                                                         cccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                                                                                              >  1:536972/1‑200 (MQ=255)
                                                                                         cccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGCGAGCGGGCC‑GGGGCGAGGG‑‑G‑aaaa                                                                                                                                                                  >  3:552765/1‑132 (MQ=255)
                                                                                             cACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCCGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt                                                                                          >  1:570419/1‑200 (MQ=255)
                                                                                               cccTAACCCTCTCCCTCCGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCt                                                                                                                                          >  4:509388/1‑150 (MQ=255)
                                                                                               cccTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGgag                                                                                                                                                                                           >  3:64985/1‑105 (MQ=255)
                                                                                               cccTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCAc                                                                                                                                                   >  2:49410/1‑141 (MQ=255)
                                                                                               cccTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCAc                                                                                                                                                   >  2:282921/1‑141 (MQ=255)
                                                                                               cccTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCt                                                                                                                                          >  4:203253/1‑150 (MQ=255)
                                                                                               cccTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCt                                                                                                                                          >  4:178872/1‑150 (MQ=255)
                                                                                               cccTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa                                                                                        >  1:864500/1‑200 (MQ=255)
                                                                                               cccTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGGGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCt                                                                                                                                          >  4:29618/1‑150 (MQ=255)
                                                                                                    aCCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAAtt                                                                                                                                              >  2:7282/1‑141 (MQ=255)
                                                                                                         ctcCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCCC‑C‑GGGGAGAGGGCC‑GGGGAGAGGG‑‑G‑AAAAGGCCGCACTGCTCAcc                                                                                                                                                  >  3:859488/1‑132 (MQ=255)
                                                                                                           cccTCAGGGAGAGGGGATC‑GTTCGGCGCTGTATGT‑ACTGCCTCACTCTGAAAC‑GACACCGCACTCTTTTTATCT‑TCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATGTTATGCTATCCTGcac                                                                                                                              >  4:359857/1‑148 (MQ=255)
                                                                                                           cccTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCaa                                                                                                                                                >  3:900817/1‑132 (MQ=255)
                                                                                                           cccTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCaa                                                                                                                                                >  3:810238/1‑132 (MQ=255)
                                                                                                           cccTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCaa                                                                                                                                                >  3:705214/1‑132 (MQ=255)
                                                                                                           cccTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCt                                                                                                                                       >  2:425742/1‑141 (MQ=255)
                                                                                                           cccTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCt                                                                                                                                       >  2:640448/1‑141 (MQ=255)
                                                                                                           cccTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc                                                                                                   >  1:146008/1‑177 (MQ=255)
                                                                                                           cccTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAAt                                                                            >  1:463962/1‑200 (MQ=255)
                                                                                                           cccTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTCTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTTCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTACACATCGTACTTTACGAACTAGAAAt                                                                            >  1:1171/1‑200 (MQ=255)
                                                                                                             cTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCaa                                                                                                                                                >  1:350859/1‑130 (MQ=255)
                                                                                                             cTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTAt                                                                                                                                     >  2:863290/1‑141 (MQ=255)
                                                                                                                   gagaGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTa                                                                                                                      >  4:732873/1‑150 (MQ=255)
                                                                                                                   gagaGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCCCACCAATCTTCTGc                                                                                                                                        >  3:381697/1‑132 (MQ=255)
                                                                                                                     gagGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTa                                                                                                                                      >  3:373783/1‑132 (MQ=255)
                                                                                                                       ggggACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑AGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATc                                                                                                                                    >  3:580553/1‑132 (MQ=255)
                                                                                                                         ggACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCC‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGCGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                                                                                                                >  4:913627/1‑150 (MQ=255)
                                                                                                                               gTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATcc                                                                                                                                   >  4:251572/1‑126 (MQ=255)
                                                                                                                               gTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg                                                                                                                    >  2:902472/1‑141 (MQ=255)
                                                                                                                                    gcgcTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                                                                                      >  4:760542/1‑150 (MQ=255)
                                                                                                                                    gcgcTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCCC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                                                                                        >  3:395292/1‑132 (MQ=255)
                                                                                                                                       cTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                                                                                                            >  2:308/1‑141 (MQ=255)
                                                                                                                                        ttgttttttcccccACACCCTAAACC‑GACCCCCCCCTTTTTTTTTCC‑CCCTCCCCCCCC‑G‑GGGGGGGGGGCG‑GGGGGGGGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc                                                                                                   <  4:697108/139‑1 (MQ=255)
                                                                                                                                         gtatgt‑aCTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                                                                                                   >  3:209936/1‑132 (MQ=255)
                                                                                                                                         gtatgt‑aCTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                                                                                                   >  3:473230/1‑132 (MQ=255)
                                                                                                                                         gtatgt‑aCTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                                                                                                          >  2:352211/1‑141 (MQ=255)
                                                                                                                                         gtatgt‑aCTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                                                                                                          >  2:182597/1‑141 (MQ=255)
                                                                                                                                         gtatgt‑aCTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                                                                                                          >  2:715910/1‑141 (MQ=255)
                                                                                                                                         gtatgt‑aCTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTGCGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTc                                               >  1:393358/1‑200 (MQ=255)
                                                                                                                                         gtatgt‑aCTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTACGCCACATACTGGCAACATCATCCGTc                                               >  1:384041/1‑200 (MQ=255)
                                                                                                                                          ttatgcccccccTCCCTCTAAACC‑ACCCCCGCATTCTTTTTTCCC‑CCCCCCCCCCGG‑G‑GGAGAGGGGGCG‑GGGGTGGGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                                                                                                          <  2:496912/132‑1 (MQ=255)
                                                                                                                                           atgt‑aCTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg                                                                                                                 >  3:886309/1‑132 (MQ=255)
                                                                                                                                           atgt‑aCTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                                                                                                        >  4:439863/1‑141 (MQ=255)
                                                                                                                                           atgt‑aCTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg                                                                                               >  4:557128/1‑150 (MQ=255)
                                                                                                                                                 cTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                                                                                                            >  3:565370/1‑132 (MQ=255)
                                                                                                                                                 cTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                                                                                                            >  3:849766/1‑132 (MQ=255)
                                                                                                                                                 cTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTgcgc                                        >  1:101788/1‑200 (MQ=255)
                                                                                                                                                   cccTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc                                                                                                   >  1:66365/1‑139 (MQ=255)
                                                                                                                                                   cccTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAt                                                                                                 >  2:469485/1‑141 (MQ=255)
                                                                                                                                                   cccTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa                                                                                        >  4:812693/1‑150 (MQ=255)
                                                                                                                                                   cccTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa                                                                                        >  4:468735/1‑150 (MQ=255)
                                                                                                                                                     cTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGTCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACg                                                                                      >  4:394767/1‑150 (MQ=255)
                                                                                                                                                         ctctGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATcc                                                                                                                                   >  3:276675/1‑101 (MQ=255)
                                                                                                                                                         ctctGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACt                                                                                           >  2:152238/1‑141 (MQ=255)
                                                                                                                                                          gcggAACC‑GACGCCGCGCTTTTTTTTCCC‑CCCTC‑CCCCCC‑G‑GGGGGGGGGGCCGGGGGGGAGGG‑‑A‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc                                                                                                   <  3:687407/129‑1 (MQ=255)
                                                                                                                                                             gAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGaa                                                                              >  4:105537/1‑150 (MQ=255)
                                                                                                                                                                    cacccccctcctTTTTTTCC‑CCCCCCCCCCCCGG‑GGGGAGAGGGCG‑GGGGGGGGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTc                       <  1:342663/190‑1 (MQ=255)
                                                                                                                                                                    acacCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGTTGCACTGCTCACCAATTTTCTGCTATTCTGCTCTCGTACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCa                                                                                 >  2:450036/1‑141 (MQ=255)
                                                                                                                                                                    acacCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt                                                                                          >  3:571526/1‑132 (MQ=255)
                                                                                                                                                                         cgtcactTTTTTTCTCCCCACCCCCCCC‑CAGGGGGGGGGACG‑GGGGTGGGGG‑‑A‑TAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc                                                                                       <  3:16150/127‑1 (MQ=255)
                                                                                                                                                                           tcttttttttcCC‑CCCCCGCCCGTG‑G‑GGGGGGGGGGCG‑GGGGAGGGGA‑‑A‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATatc               <  1:261872/196‑1 (MQ=255)
                                                                                                                                                                            ctctTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc                                                                                  >  3:75386/1‑132 (MQ=255)
                                                                                                                                                                            ctctTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTcc                                                                         >  2:128959/1‑141 (MQ=255)
                                                                                                                                                                             tttttttttCC‑CCCCCCCCCCGG‑G‑GGGGAGGGGGCG‑GGGGTGGGGA‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATatcat             <  1:622983/198‑1 (MQ=255)
                                                                                                                                                                              ctTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTACGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg                                                                                >  3:340564/1‑132 (MQ=255)
                                                                                                                                                                              ctTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg                                                                                >  3:833627/1‑132 (MQ=255)
                                                                                                                                                                              ctTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGc                                                                       >  2:518106/1‑141 (MQ=255)
                                                                                                                                                                              ctTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATatcatc            >  1:778056/1‑200 (MQ=255)
                                                                                                                                                                              ctTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGGGAGGG‑‑G‑AAAAGGCCGCTCTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAATCAGAAATTCCGCCAACTACtt                                                              >  4:819362/1‑149 (MQ=255)
                                                                                                                                                                              ctTTTTTTCT‑CCCTCGCCCCCC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAATGCCGCACTGCTCACCAATTCTCTGCTATCCTGCCCCCGCACTAAGGGGTCAGTATGCTAAACATCGTACTTTACGAACCAg                                                                                >  3:112684/1‑132 (MQ=255)
                                                                                                                                                                               tttttttCC‑CCCCCCCCCCCC‑T‑GGGGAGAGGGGG‑AGGGTGTGGGGAG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATatcat             <  1:922847/200‑1 (MQ=255)
                                                                                                                                                                                   ttcccccccCCGCCCCCG‑G‑GGGGGGGGGGGG‑GGGGGGGGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATATCATCGAAc        <  1:472704/194‑1 (MQ=255)
                                                                                                                                                                                         cccTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGTCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGcc                                                                      >  3:33244/1‑132 (MQ=255)
                                                                                                                                                                                          ccTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCa                                                                     >  3:428832/1‑132 (MQ=255)
                                                                                                                                                                                             cGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGt                                                >  4:575936/1‑150 (MQ=255)
                                                                                                                                                                                             |                                                                                                                                                                                                         
CAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACC‑GTTCGGCGCTGTATGT‑ACTCCCTCACTCTGAAAC‑GACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTC‑C‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATATCATCGAACCGATGG  >  NC_000913/3780940‑3781320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.