| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1238953 = | 113 (1.000) | 3 (0.030) | 3/296 | 12.8 | 2.6% | coding (75/1071 nt) | dadX | alanine racemase, catabolic, PLP‑binding |
| ? | NC_000913 | 1238969 = | 114 (1.050) | coding (91/1071 nt) | dadX | alanine racemase, catabolic, PLP‑binding | |||||
| Rejected: Position hash score below cutoff. | |||||||||||
GGTCATAAATCTCCAGATCCTGAGCATGGAAAAATCCTTCCAGCATCAGGATCGGTCCTTTCCAGCCGCGCTCACGTAACGTTATTGCCTCTTCCAGGTTAAGCAATGCAAAGCCATCGGTGGCCCCGATCGCGCTCCAGATACGCTCAATACCATGCCCGTAAGCGTTCGCTTTTACCACCGACCAGACGCGCGCGTGCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1239155‑1238953‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtcTGGTCGGTGGTAAAAGCGAACGCTTACGGGCATGGTATTGAGCGTATCTGGAGCGCGATCGGGGCCACCGATGGCTTTGCATTGCTTAACCTGGAAGAGGCAATAACGTTACGTGAGCGCGGCTGGAAAGGACCGATCCTGATGCTGGAAGGATTTTTCCATGCTCAGGATCTGGAGATTTATGACCAGCACCGCC > NC_000913/1238969‑1239164 GGTCATAAATCTCCAGATCCTGAGCATGGAAAAATCCTTCCAGCATCAGGATCGGTCCTTTCCAGCCGCGCTCACGTAACGTTATTGCCTCTTCCAGGTTAAGCAATGCAAAGCCATCGGTGGCCCCGATCGCGCTCCAGATACGCTCAATACCATGCCCGTAAGCGTTCGCTTTTACCACCGACCAGACGCGCGCGTGC < 4:540337/200‑1GGTCATAAATCTCCAGATCCTGAGCATGGAAAAATCCTTCCAGCATCAGGATCGGTCCTTTCCAGCCGCGCTCACGTAACGTTATTGCCTCTTCCAGGTTAAGCAATGCAAAGCCATCGGTGGCCCCGATCGCGCTCCAGATACGCTCAATACCATGCCCGTAAGCGTTCGCTTTTACCACCGACCAGACGCGCGCGTGC > 4:624796/1‑200GGTCATAAATCTCCAGATCCTGAGCATGGAAAAATCCTTCCAGCATCAGGATCGGTCCTTTCCAGCCGCGCTCACGTAACGTTATTGCCTCTTCCAGGTTAAGCAATGCAAAGCCATCGGTGGCCCCGATCGCGCTCCAGATACGCTCAATACCATGCCCGTAAGCGTTCGCTTTTACCACCGACCAGACGCGCGCGTGC > 4:840019/1‑200 TTTCCAGCCGCGCTCACGTAACGTTATTGCCTCTTCCAGGTTAAGCAATGCAAAGCCATCGGTGGCCCCGATCGCGCTCCAGATACGCTCAATACCATGCCCGTAAGCGTTCGCTTTTACCACCGACCAGACGCGCGCGTGCGTCTGGTC < 2:220444/150‑1 TGCAAAGCCATCGGTGGCCCCGATCGCGCTCCAGATACGATCAATACCATGCCCGTAAGCGTTCGCTTTTACCACCGACCAGACGCGCGCGTGCGTCTGGTCGGTGGTAAAAGCGAACGCTTACGGGCATGGTATTGAGCGTATCTGGAG < 2:288348/150‑1 GCCCCGATCGCGCTCCAGATACGCTCAATACCATGCCCGTAAGCGTTCGCTTTCACCACCGACCAGACGCGCGCGTGCGTCTGGTCGGTGGTAAAAGCGAACGCTTACGGGCATGGTATTGAGCGTATCTGG < 3:449209/132‑1 CGTCTGGTCGGTGGTAAAAGCGAACGCTTACGGGCATGGTATTGAGCGTATCTGGAGCGCGATCGGGGCCACCGATGGCTTTGCATTGCTTAACCTGGAAGAGGCAATAACGTTACGTGAGCGCGGCTGGAAAGGACCGATCCTGATGCTGGAAGGATTTTTCCATGCTCAGGATCTGGAGATTTATGACCAGCACCGCC < 4:822279/200‑1 CGTCTGGTCGGTGGTAAAAGCGAACGCTTACGGGCATGGTATTGAGCGTATCTGGAGCGCGATCGGGGCCACCGATGGCTTTGCATTGCTTAACCTGGAAGAGGCAATAACGTTACGTGAGCGCGGCTGGAA > 3:568186/1‑132 CGTCTGGTCGGTGGTAAAAGCGAACGCTTACGGGCATGGTATTGAGCGTATCTGGAGCGCGATCGGGGCCACCGATGGCTTTGCATTGCTTAACCTGGAAGAGGCAATAACGTTACGTGAGCGCGGCTGGAA < 3:696134/132‑1 TCTGGTCGGTGGTAAAAGCGAACGCTTACGGGCATGGTATTGAGCGTATCTGGAGCGCGATCGGGGCCACCGATGGCTTTGCATTGCTTAACCTGGAAGAGGCAATAACGTTACGTGAGCGCGGCTGGAAAG < 3:587864/132‑1 GGTCATAAATCTCCAGATCCTGAGCATGGAAAAATCCTTCCAGCATCAGGATCGGTCCTTTCCAGCCGCGCTCACGTAACGTTATTGCCTCTTCCAGGTTAAGCAATGCAAAGCCATCGGTGGCCCCGATCGCGCTCCAGATACGCTCAATACCATGCCCGTAAGCGTTCGCTTTTACCACCGACCAGACGCGCGCGTGCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1239155‑1238953‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtcTGGTCGGTGGTAAAAGCGAACGCTTACGGGCATGGTATTGAGCGTATCTGGAGCGCGATCGGGGCCACCGATGGCTTTGCATTGCTTAACCTGGAAGAGGCAATAACGTTACGTGAGCGCGGCTGGAAAGGACCGATCCTGATGCTGGAAGGATTTTTCCATGCTCAGGATCTGGAGATTTATGACCAGCACCGCC > NC_000913/1238969‑1239164 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |