New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3221854 =	89 (0.790)	7 (0.070)	7/290	10.0	8.0%	coding (389/984 nt)	ebgR	transcriptional repressor
	?	NC_000913	3221915 =	76 (0.710)					coding (450/984 nt)	ebgR	transcriptional repressor
Rejected: Position hash score below cutoff.

CGCCTTGCCAGGCTCATCTTCACCGCCAATAAAACCAATACGATTAACGCCCTGGTTGATATAGAAGTCGATGATTTCTTTACTGATGCGTGCCAGATCGATATCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3222032‑3221854 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagcggTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAGGGCGTTAATCGTATTGGTTTTATTGGCGGTGAAGATGAGCCTGGCAAGGCGGATATTCGTGAGGTCGCCTTTGCGGAATATGGCCGACTGAAACAAGTGGTACGCGAAGAGGATATCTGGCGCGGCGGTTTT  >  NC_000913/3221915‑3222113                                                                                                                                                                                                                                                                                                                                                                                            CGCCTTGCCAGGCTCATCTTCACCGCCAATAAAACCAATACGATTAACGCCCTGGTTGATATAGAAGTCGATGATTTCTTTACTGATGCGTGCCAGATCGATATCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGTTACGATGCGGTGGATATCGA                                                                                                                                                                                    <  4:278199/200‑1   CCTTGCCAGGCTCATCTTCACCGCCAATAAAACCAATACGATTAACGCCCTGGTTGATATAGAAGTCGATGATTTCTTTACTGATGCGTGCCAGATCGATATCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGTTACGATGCGGTGGATATCGATC                                                                                                                                                                                  <  4:239598/200‑1               CATCTTCACCGCCAATAAAACCAATACGATTAACGCCCTGGTTGATATAGAAGTCGATGATTTCTTTACTGATGCGTGCCAGATCGATATCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGG                                                                                                                                                                                                         <  4:121298/165‑1                          CCAATAAAACCAATACGATTAACGCCCTGGTTGATATAGAAGTCGATGATTTCTTTACTGATGCGTGCCAGATCGATATCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCA                                                                                                                                                                                                             >  2:189687/1‑150                           CAATAAAACCAATACGATTAACGCCCTGGTTGATATAGAAGTCGATGATTTCTTTACTGATGCGTGCCAGATCGATATCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAG                                                                                                                                                                                                            >  2:873837/1‑150                                    CAATACGATTAACGCCCTGGTTGATATAGAAGTCGATGATTTCTTCACTGATGCGTGCCAGATCGATATCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAG                                                                                                                                                                                                            <  1:410528/141‑1                                              AACGCCCTGGTTGATATAGAAGTCGATGATTTCTTTACTGATGCGTGCCAGATCGATATCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGTTACGAT                                                                                                                                                                                                  <  1:184167/141‑1                                               ACGCCCTGGTTGATATAGAAGTCGATGATTTCTTTACTGATGCGTGCCAGATCGATATCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGTTACGATG                                                                                                                                                                                                 <  1:240415/141‑1                                                 GCCCTGGTTGATATAGAAGTCGATGATTTCTTTACTGATGCGTGCCAGATCGATAGCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGT                                                                                                                                                                                                        <  3:713377/132‑1                                                                          ATTTCTTTACTGTTGCGTGCCAGTTCGATATCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCGTCAGTAAAGAAA                                                                                                                                                             <  2:706614/150‑1                                                                                                                 tcggacCCGCTGCCGGGTTCGGGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACC                                                                                                                                        <  3:204363/126‑1                                                                                                                                                                             GCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAGGGCGTTAATCGTATTGGTTTTATTGGCGGTGAAGATGAGCCTGGCAAGGCGGATATTCGTGAGGTCGCCTTTGCGG                                                          <  2:872564/150‑1                                                                                                                                                                                   GTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAGGGCGTTAATCGTATTGGTTTTATTGGCGGTGAAGATGAGCCTGGCAAGGCGGATATTCGTGAGGTCGCCTTTGCGGAATATGGCCGACTGAAACAAGTGGTACGCGAAGAGGATATCTGGCGCGGCGGTTTT  >  4:663375/1‑200                                                                                                                                                                                   GTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAGGGCGTTAATCGTATTGGTTTTATTGGCGGTGAAGATGAGCCTGGCAAGGCGGATATTCGTGAGGTCGCCTTTGCGGAATATG                                                    >  2:927462/1‑150                                                                                                                                                                                                                                                                                                                                                                                            CGCCTTGCCAGGCTCATCTTCACCGCCAATAAAACCAATACGATTAACGCCCTGGTTGATATAGAAGTCGATGATTTCTTTACTGATGCGTGCCAGATCGATATCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3222032‑3221854 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagcggTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAGGGCGTTAATCGTATTGGTTTTATTGGCGGTGAAGATGAGCCTGGCAAGGCGGATATTCGTGAGGTCGCCTTTGCGGAATATGGCCGACTGAAACAAGTGGTACGCGAAGAGGATATCTGGCGCGGCGGTTTT  >  NC_000913/3221915‑3222113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.