| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3739543 | 191 (1.870) | 5 (0.050) | 5/284 | 9.1 | 2.7% | intergenic (+16/‑162) | malS/avtA | alpha‑amylase/valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase |
| ? | NC_000913 | = 3739556 | 184 (1.930) | intergenic (+29/‑149) | malS/avtA | alpha‑amylase/valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase | |||||
| Rejected: Position hash score below cutoff. | |||||||||||
GGCAGGATGTTAGCGGTAAATCTGCCGCCAGCGTCGCGCACTGGCAGAAAATCAGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3739343‑3739543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcttcccgAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGCTTCAGCAAAAGTGTCGTTTGTTTGCCCGCGCCAATTGCGGGATGGCGGGCGCGGAACTGGCTGAT < NC_000913/3739556‑3739393 GGCAGGATGTTAGCGGTAAATCTGCCGCCAGCGTCGCGCACTGGCAGAAAATCAGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCC > 2:424446/1‑200GGCAGGATGTTAGCGGTAAATCTGCCGCCAGCGTCGCGCACTGGCAGAAAATCAGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCC > 2:537308/1‑200GGCAGGATGTTAGCGGTAAATCTGCCGCCAGCGTCGCGCACTGGCAGAAAATCAGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGACAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCC > 2:67060/1‑200 GGCAGAAAATCAGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCC > 1:233448/1‑150 GGCAGAAAATCAGCCAGTTCCGCGCCCGCCATCCCGCAATTAGCGCGGGCAAACAAACGACACTTTTGCTGCAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCC > 1:529975/1‑150 CAGAAAATCAGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGG < 1:710501/150‑1 CAGAAAATCAGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGG > 1:772566/1‑150 gAAATCAGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTTGGCAGGGCAACACTAACTTTTCCGGCTT > 1:402536/2‑150 AAATCAGCCAGTTCCGCGCCCGCCATCCCGCTATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTTGTGAGCATGGCGACGATCAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTC > 1:388412/1‑150 GCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGC < 3:141805/141‑1 GTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCC > 3:79956/1‑141 CGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCC > 4:546706/1‑132 GCGCGGGCAAACAAACGGCACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGAATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGAGGTACTGACGAACGGGAAGCCAGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAAC < 2:821564/200‑1 GGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGACCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGAAACCCTGCTTCCGCAAAc > 1:644446/1‑149 TCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGCTTCAGCAAAAGTGTCGTTTGTTTGCCCGCGCCAATTGCGGGATGGCGGGCGCGGAACTGGCTGAT > 2:137546/1‑200 ACAGTAACTTTTCCGGCTTCCCGAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGCTTCAGCAAAAGTGTCGTTTGTTTGCCCG > 1:10520/1‑150 CTTTTCCGGCTTCCCGAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGCTTCAGCAAAAGTGTCGT > 4:153621/1‑132 GCTTCCCGAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTAGCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGCTTCAGCAAAAGTGTCGTTTGTTTGCCCGCGCCAATTGCGGGAT < 1:530341/150‑1 CTTCCCGAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGCTTCAGCAAAAGTGTCGTTTGTTTGCCCGCGCCAATTGCGGGATG > 1:240828/1‑150 CCCGAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGCTTCAGCAAAAGTGTCGTTTGTTTGCCCGCGCCAATTGC > 3:564284/1‑141 GAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGCTTCAGCAAAAGTGTCGTTTGTTTGCCCGCGCCAATTGCGGG < 3:231718/141‑1 GGCAGGATGTTAGCGGTAAATCTGCCGCCAGCGTCGCGCACTGGCAGAAAATCAGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3739343‑3739543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcttcccgAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGCTTCAGCAAAAGTGTCGTTTGTTTGCCCGCGCCAATTGCGGGATGGCGGGCGCGGAACTGGCTGAT < NC_000913/3739556‑3739393 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |