Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 1103313 | 1103979 | 667 | 43 [37] | [38] 40 | [csgB] | [csgB] |
CTGCAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGCCATTACAAATCTTAAATCAAGTGTTAAACATGTAACTAAATGTAACTCGTTATATTAAAATGTTAACCTTAAGGTTTTATTAAGTTTAGAAA > NC_000913/1103113‑1103449 | ctgcAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGAACGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAt < 2:439566/200‑1 (MQ=255) gcAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAt < 2:308835/198‑1 (MQ=255) gCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAAc < 2:222676/200‑1 (MQ=255) agaagaTTTAGTGATCAACAATAATGTATGACAATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTGGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGAt < 2:342856/200‑1 (MQ=255) tGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGCCAt > 2:558893/1‑200 (MQ=255) cATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTaa > 1:330736/1‑150 (MQ=255) cATGAATACTATAGACTTCATTAAACATGATGAAACCCCGCTGTTTGTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAAc < 2:330764/160‑1 (MQ=255) gAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAANNNNGCCCTAAATGGGTAAAat < 1:212464/150‑1 (MQ=255) gAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAt < 3:43582/141‑1 (MQ=255) gAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAt < 3:561557/141‑1 (MQ=255) aTGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAAc < 1:279436/150‑1 (MQ=255) gACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATg < 4:281613/132‑1 (MQ=255) cATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGAt < 1:274929/150‑1 (MQ=255) aTTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAAc < 3:482787/141‑1 (MQ=255) aTTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAAc < 3:558689/141‑1 (MQ=255) aTTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAAc < 3:518008/141‑1 (MQ=255) cATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATgg < 3:398689/141‑1 (MQ=255) gatgaAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAAc < 4:456001/132‑1 (MQ=255) gatgaAACACCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAAc < 4:453482/132‑1 (MQ=255) tttttATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAACTCAGCCCTAAAt > 4:114959/1‑101 (MQ=255) tttttATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAt < 3:114963/101‑1 (MQ=255) acCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGCCATTACAAATc < 3:281965/141‑1 (MQ=255) cTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGCCATTACAAATCTTAAATCAAGTGTTAAAc < 1:558841/150‑1 (MQ=255) cACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGCCATTACAAATCTTAAATCAAGTGTTAAAc < 4:427294/132‑1 (MQ=255) ccAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAAc < 2:629019/72‑1 (MQ=255) ccAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAAc > 1:628964/1‑72 (MQ=255) ccAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGCCATTACAAATCTTAAATCAAGTGTTAAACAt > 4:594311/1‑132 (MQ=255) gaaaGATGTTACACTGCTGGGTGTAGTAATAAATCAGACATAAATGGGTAAAATATAAAACTAATGGATTACATCTGAGTTCAATCTAGCCATTACAAATCTTAAATCAAGTGTTAATCATGTAACTAAATGTAAATCGTTATATTaaaa < 1:723799/147‑1 (MQ=255) aTGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATgg > 3:198362/1‑62 (MQ=255) aTGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATgg < 4:198358/62‑1 (MQ=255) ctgctgTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAAc < 3:255171/48‑1 (MQ=255) ctgctgTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAAc > 4:255164/1‑48 (MQ=255) gtgtgtAGTAATAAATCAGCCCTAAATGGGTAAAatat < 2:347924/38‑1 (MQ=255) gtgtgtAGTAATAAATCAGCCCTAAATGGGTAAAatat > 1:347892/1‑38 (MQ=255) gtaATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATg < 2:284287/41‑1 (MQ=255) gtaATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATg > 1:284262/1‑41 (MQ=255) gtaATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGAt < 3:234704/44‑1 (MQ=255) gtaATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGAt > 4:234698/1‑44 (MQ=255) gtaATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGCCATTAc > 2:146863/1‑71 (MQ=255) gtaATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGCCATTAc < 1:146852/71‑1 (MQ=255) gtaATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGCCATTACAAATCTTAAATCAAGTGTTAAACATGTAACTAAATGTAACTCGTTATATTaaaa < 2:301337/125‑1 (MQ=255) gtaATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGCCATTACAAATCTTAAATCAAGTGTTAAACATGTAACTAAATGTAACTCGTTATATTaaaa > 1:301311/1‑125 (MQ=255) aTCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGCCATTACAAATCTTAAATCAAGTGTTAAACATGTAACTAAATGTAACTCGTTATATTAAAATGTTAACCTTAAGGTTTTATTAAGTTTAGaaa < 1:732601/150‑1 (MQ=255) | CTGCAAGAGAGCTGTCGCCTGCAAAGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTAAAATATAAAACTAATGGATTACATCTGATTTCAATCTAGCCATTACAAATCTTAAATCAAGTGTTAAACATGTAACTAAATGTAACTCGTTATATTAAAATGTTAACCTTAAGGTTTTATTAAGTTTAGAAA > NC_000913/1103113‑1103449 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |