Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4251394	4252029	636	33 [32]	[28] 34	yjbI	pseudogene, SopA‑related, pentapeptide repeats‑containing

GATATGATCAAAGCAAATGTTTGGCATCTTTATAAAGAGTGGATTCGTAGTGATGATGTTTCACCTATATTTATAGAAACTGAAGATAATTTAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATGAGATGTTGCCTGTTAATCTTACTCAGGAAACACTTTTCAGCTCCAAATCTCATGGTAAATATGCGC  >  NC_000913/4251897‑4252224                                                                                                                                      |                                                                                                                                                                                                   gatatgatCAAAGCAAATGTTTGGCATCTTTATAAAGAGTGGATTCGTAGTGATGATGTTTCACCTATATTTATAGAAACTGAAGATAATTTAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGa                                                                                                                                  >  2:261184/1‑200 (MQ=255)      gatCAAAGCAAATGTTTGGCATCTTTATAAAGAGTGGATTCGTAGTGATGATGTTTCACCTATATTTATAGAAACTGAAGATAATTTAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGt                                                                                                                                                                               >  3:389259/1‑150 (MQ=255)                                  aaaGAGTGGATTCGTAGTGATGATGTTTCACCTATATTTATAGAAACTGAAGATAATTTAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGc                                                                                                                                                   <  3:65631/150‑1 (MQ=255)                                                        atgTTTCACCTATATTTATAGAAACTGAAGATAATTTAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTccc                                                                                                                                               >  1:143425/1‑132 (MQ=255)                                                              cACCTATATTTATAGAAACTGAAGATAATTTAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATc                                                                                                                       >  3:122136/1‑150 (MQ=255)                                                                ccTATATTTATAGAAACTGAAGATAATTTAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATga                                                                   >  2:438908/1‑200 (MQ=255)                                                                ccTATATTTATAGAAACTGAAGATAATTTAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATACCTACAAATCCAGACATga                                                                   >  2:285550/1‑200 (MQ=255)                                                                         ataGAAACTGAAGATAATTTAAGAACCTCTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATAGGCAAGTTATGGAGGTAAGCTCCTAGCTCTTACATGATATGTTGAATCCTACAAAATAt                                                                                                            >  3:310362/1‑150 (MQ=255)                                                                                        aaTTTAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTcc                                                                                             >  3:241362/1‑150 (MQ=255)                                                                                          tttAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTtc                                                                                                                                                                                       >  3:489771/1‑58 (MQ=255)                                                                                          tttAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTtc                                                                                                                                                                                       <  2:489799/58‑1 (MQ=255)                                                                                          tttAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATGAGATGTTGCCTGTTAATCTTAGTCAgg                                         >  2:738016/1‑200 (MQ=255)                                                                                                  ccTTTAACCCGCATGAATCAACACGCAACGATAATATCTTTATCCTGTTCTCCTCAGTCGACTATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATTATATGTTGAATCCTACAACAGCTACCACtt                                                                                                     >  1:214408/1‑132 (MQ=255)                                                                                                  ccTTTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCa                                                                                            >  4:143003/1‑141 (MQ=255)                                                                                                  ccTTTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATGAGATGTTGCCTGTTAATCTTACTCAGGAAACACtt                                 >  2:377044/1‑200 (MQ=255)                                                                                                                 aatTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATc                                                                            <  2:378518/142‑1 (MQ=255)                                                                                                                 aatTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATc                                                                            >  3:378493/1‑142 (MQ=255)                                                                                                                 aatTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATGAGATGTTGCCTGTTAATCTTACTCAGGAAACACTTTTCAGCTCCAAAtct                  >  2:301676/1‑200 (MQ=255)                                                                                                                 aatTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATGAGATGTTGCCTGTTAATCTTACTCAGGAAACACTTTTCAGCTCCAAAtct                  >  2:249931/1‑200 (MQ=255)                                                                                                                      acacGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATGAGATg                                                               <  3:438884/150‑1 (MQ=255)                                                                                                                            aaCGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAACTGGAATTCCACGTATATCTACAAATCCAGACATGAGATGTTGCCTGTTAATCTTACTCAGGAAACACTTTTCAGCTCCAAATCTCATGGTAAata       <  2:389283/200‑1 (MQ=255)                                                                                                                                ataataTCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTACGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGAc                                                                       >  1:208410/1‑132 (MQ=255)                                                                                                                                ataataTCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATcc                                                                                                                      <  1:236322/85‑1 (MQ=255)                                                                                                                                ataataTCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATcc                                                                                                                      >  4:236329/1‑85 (MQ=255)                                                                                                                                ataataTCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATGAGATGt                                                              >  4:286586/1‑141 (MQ=255)                                                                                                                                ataataTCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATGAGATGTTGCCTGTTa                                                     >  3:49678/1‑150 (MQ=255)                                                                                                                                ataataTCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATGAGATGTTGCCTGTTAATCTTACTCAGGAAACACTTTTCAGCTCCAAATCTCATGGTAAATATgcg   >  2:679038/1‑200 (MQ=255)                                                                                                                                 taataTCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATGAGATGTTGCCTGTTAATCTTACTCAGGAAACACTTTTCAGCTCCAAATCTCATGGTAAATATgcgc  <  2:241365/200‑1 (MQ=255)                                                                                                                                      tCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATgaga                                                                 >  1:19916/1‑132 (MQ=255)                                                                                                                                      tCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATgaga                                                                 >  1:149493/1‑132 (MQ=255)                                                                                                                                      tCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATGAGATGTTGCCTg                                                        >  4:175204/1‑141 (MQ=255)                                                                                                                                      tCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATGAGATGTTGCCTGTTAATCTTa                                               >  3:443007/1‑150 (MQ=255)                                                                                                                                      tCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATGAGATGTTGCCTGTTAATCTTa                                               >  3:539868/1‑150 (MQ=255)                                                                                                                                      tCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATGAGATGTTGCCTGTTAATCTTa                                               >  3:577657/1‑150 (MQ=255)                                                                                                                                      |                                                                                                                                                                                                   GATATGATCAAAGCAAATGTTTGGCATCTTTATAAAGAGTGGATTCGTAGTGATGATGTTTCACCTATATTTATAGAAACTGAAGATAATTTAAGAACCTTTAACACGAATGAATTAACACGAAACGATAATATCTTTATCCTGTTCTCCTCAGTCGATGATGGGCCAGTTATGGTGGTAAGCTCCCAGCGCTTACATGATATGTTGAATCCTACAAAAGATACCAATTGGAATTCCACGTATATCTACAAATCCAGACATGAGATGTTGCCTGTTAATCTTACTCAGGAAACACTTTTCAGCTCCAAATCTCATGGTAAATATGCGC  >  NC_000913/4251897‑4252224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.