Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_000913	4,476,988	0	T→.	100.0%	4.1	1	coding (1552/1815 nt)	yjgL	SopA‑central‑domain‑like hexapeptide repeat protein
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (0/1):  ref base (0/0):  total (0/1)

TTTAGTGAATGATATTTTTATGAATGATTTCTTTATGAAAAATCCTGAGATGATTAATTGGTACTTCCCTCAGTTACTTAAGAGTTATGAGGGTGAAAAGATTTATTTTGATAATTTAAAATATGATTTAAATGATAATGATAAGGAATCTAATAAAGAAATTTTGAAGAATCAACCAGATAATGTTATCAAAGAAAAACTG  >  NC_000913/4476882‑4477083                                                                                                           |                                                                                                tttAGTGAATGATATTTTTATGAATGATTTCTTTATGAAAAATCCTGAGATGATTAATTGGTACTTCCCTCAGTTACTTAAGAGTTATGAGGGTGAAAAGATTTA‑‑TTGATAATTTAAAATATGATTTAAATGATAATGATAAGGAATCTAATAAAGAAATTTTGAAGAATCAACCAGATAATGTTATCAAAGAAAAACTg  <  2:46609/200‑1 (MQ=255)                                                                                                           |                                                                                                TTTAGTGAATGATATTTTTATGAATGATTTCTTTATGAAAAATCCTGAGATGATTAATTGGTACTTCCCTCAGTTACTTAAGAGTTATGAGGGTGAAAAGATTTATTTTGATAATTTAAAATATGATTTAAATGATAATGATAAGGAATCTAATAAAGAAATTTTGAAGAATCAACCAGATAATGTTATCAAAGAAAAACTG  >  NC_000913/4476882‑4477083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.