New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	19 (0.580)	9 (0.290)	8/568	2.2	30.0%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	1209619 =	24 (0.770)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

AGACACGAAAACCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCAC  >  NC_000913/1207512‑1208060                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                               cgcatactacgccccagccgatccagcttccagacaaccagagtgtcacctgccgataatgtcctgagcagttttttcagtcccggcctttcggactttgtgccgcttatcttgtcttcaaaaatcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa                                                                                                                                                                                                                                                          <  2:27255‑M1/23‑1 (MQ=255)            ccGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctctgcattacctgttgg                                                                                                                                                                                                                                               <  1:11855/301‑19 (MQ=255)                       gATTAGTTCGGCGCGGGTAAGAAAGTTTGTATCCGTGGTAACCGCCAGACCGGCACGCATGCCACCTATCGGGATGATGACTGCTTTGACATGTTGCAAGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAAAATCCGTTAGGCAATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa                                                                                                                                                                                                                                     <  2:32954/300‑1 (MQ=255)                                        tAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCCCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCACCTCGGCTGGACCTGTCAAAACGGCCCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTAAATGCAGCAAAGGCTACATTAGGACGCTCCGGtt                                                                                                                                                                                                                     >  2:231651/1‑299 (MQ=18)                                            aaCGGTCTTACCCGGGGGAAACCCACTGCTGGCACGGCTGCCAACGGACTGGATGATGGCTGCGTTGCAAGGGACCAAGAGGAACTTTGCAGCGTGGGGGAGTCATCCGGGGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACATACCGCACTGCACGCGCTTCTGTTCAGCCGCAAAAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa                                                                                                                                                                                                                <  2:255081/300‑1 (MQ=255)                                             ttacactgcgtgtagtttctttaccagttttttccttaccagcctttgggacttttggctgtgtatcttgtcttcaaaaatgagctcgcatcctgcacagttcagcgcattacgttgtagatttgttttctggtgatttgttgattcgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc                                                                                                                                                                                                              >  2:37843‑M1/235‑301 (MQ=255)                                                          gggTAACCCCCCGGCCAGACCGCCTGCCAACGATCTGGAAGATGACTACTTTGAAATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt                                                                                                                                                                                                  <  2:163646/299‑1 (MQ=255)                                                                         cggtacgcgttcaacctacgaggATGATGACTACGTTGGAGGGTTGGCGGGGGACCGTGGCGGCGTGGTGGAGGCATCCGAGGCCAGCCTGGAGAAGGTGCGGCAAGACCAGTTACTTACCGCACTGCGCGCGCTGCTGTTAAGCCGCAACAATCCGTTTGGCGAGATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCGATACCGGTTATGATTGGTGGTATTGAg                                                                                                                                                                                  <  2:9011/280‑1 (MQ=255)                                                                                      aCCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCATCAACGGCTACATTCGGACGCACCGGTTTCCTAGCTATACCGGATAAGATTGGTGGTATTGAGCAATCAGTAATCa                                                                                                                                                                     >  2:19288/1‑301 (MQ=255)                                                                                                   atgggtgcagttagaatttgaaagcggaACTTTGCAGCGAGGTTGAGGCATACGGTTCAAGACTGAAGAAGGGGAGCAACGACCAGTTACTTACCGAACTTCGCGCGCTGCTGTTAAGCGGCAAGATTCCGTTTGACGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTg                                                                                                                                                        <  2:145270/276‑1 (MQ=255)                                                                                                      gccgcttatcttgtcttcaaaaatcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagaatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGTTTGGTGGTATTGAGCAATCAGTATTCATTCAGTGGGGGTGGaa                                                                                                                                                     <  2:200486‑M1/124‑1 (MQ=255)                                                                                                                         ggaggaACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCCTGGCTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc                                                                                                                                   >  1:47874/1‑300 (MQ=255)                                                                                                                           aatcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCctc                                                                                                                                >  1:27257‑M1/157‑301 (MQ=255)                                                                                                                            ggaACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATACCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTGTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTCTCAGAGCTATACCGCTTATGATTGGTGGTAGTGAGCAATCAGTAATCATTCAGGTGGGGTGGAATGCTGAAAAAGCATCTGccg                                                                                                                                 >  2:173101/1‑298 (MQ=25)                                                                                                                                        cGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACTGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTTGGGGTGGAATGCCGCCAACGCAGCTGCCTCTGGGGGGGATGGa                                                                                                                   >  2:151731/1‑301 (MQ=255)                                                                                                                                                                    gagaAGGTGCGGCACGACCAATTAGTTGCCGCACTTNGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCTGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGAGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATGGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGttt                                                                                        <  2:47871/300‑1 (MQ=255)                                                                                                                                                                               gcACGACCAATTACATACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCATTTGGCGATATCAAAACGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAACAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCtg                                                                             <  1:231661/300‑1 (MQ=255)                                                                                                                                                                                   catttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTg                                                                        <  2:318357‑M1/201‑1 (MQ=255)                                                                                                                                                                                            ttcaaacctgtgttcttcccatctttAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGTAGGTAACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGACCAAAACTCAATGCAGCAACTGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCgttgtt                                                                <  1:269456/276‑1 (MQ=255)                                                                                                                                                                                                                 ctgTTAAGCCGCAAGAATCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGGGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAgc                                           <  1:173111/300‑1 (MQ=255)                                                                                                                                                                                                                    ttAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCCATCAGTAATCATTCAGTGGGGGTGGAATGCTGCAAAAGCATCAGCCTCTGGGGGGAATGGAAAGACAGTGGTATTCCAGGTTGCGTTTAATAATGCAGGTGTTTCCgttgttagatcggtagggcggcgtgttgggg                                       >  2:269445/1‑276 (MQ=38)                                                                                                                                                                                                                            aaagagcgcttgttggcatcgcAAATCGGAATGCAGCGTACCAACGTCTGTCGAACACCTTAGTTTGAGAGACTGAGCAAAACTGCAAGTGGCATCAGCTACATTAGTACGCACCGTGTTCCTAGCTATACCGTTTCTTATTGGTAGTATTGAGCAATCATTGATCATTCAGTGAGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATAGAAATACGGTTATATTCCCGGTTGCGTTTAATAATGCCTGTGTTTCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAAt                               <  2:34760/280‑1 (MQ=255)                                                                                                                                                                                                                                   ccgctcttcctatctatgcattttgttttttcttttttcagttgcataaccgTTGGTTTGGGTGAAGGAGCAAAACTTAACGCAGCAACGGCTAAATTAGGACGCACCGGTTTCATAGCTATGCCGGTTATGATTGGTGTTATTGAGCAATCCGTAATCAGTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTgg                        >  2:84252‑M1/53‑301 (MQ=255)                                                                                                                                                                                                                                    taaaagcaggaagtatgccatttggttgttatttctgcattttcaaaaacgTTGGTTTGGGAGAAAAATCAAAACTAAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGGGCAATCAGTAATCAGTCAGGAGGGGTGGAATGCCGCAAAAGCATCTGCCTCTTGGGGGTATTGAATTACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTgg                        >  1:279437‑M1/52‑300 (MQ=255)                                                                                                                                                                                                                                         ggCGATATCAAATCGGATTGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGCATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTCGGGGGGATGGAAATACATTTGTATTCCAGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGTAACTTATGAATATGTCGGCGCATCTTTCAATTCATTggtta                     >  2:302322/1‑295 (MQ=255)                                                                                                                                                                                                                                          gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACTTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTCGGATGCACCGGCTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCTATCAGTAATCATTCAGTGGGGGTGGAATGCCGCATAAGATTCTGCCTCTGGGGGGGATGGAAACACAGTTGTATTCCTGGTTGCGTTTAATAATGCCTGTGTTTACGTTGTTCAAAATTATGACAACGTCATGCAACCTATACATGCAGATGCAACagg                 >  2:266010/1‑301 (MQ=255)                                                                                                                                                                                                                                                  atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCCGTCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATgtccgcgcacctatcaatgctggcgagatctgaagagca          <  1:84258‑M1/263‑20 (MQ=255)                                                                                                                                                                                                                                                         ttggttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAACTACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCAc  >  1:318371‑M1/31‑301 (MQ=255)                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                               AGACACGAAAACCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCAC  >  NC_000913/1207512‑1208060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.