New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4377070 =	24 (0.730)	3 (0.090)	3/588	4.1	12.4%	coding (196/318 nt)	sugE	multidrug efflux system protein
	?	NC_000913	4377134 =	19 (0.590)					coding (260/318 nt)	sugE	multidrug efflux system protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

TTTCACCGGGGACGGCCCCAATTCTCCGGAGCCTGATATGTCCTGGATTATCTTAGTTATTGCTGGTCTGCTGGAAGTGGTATGGGCCGTTGGCCTGAAATATACCCACGGCTTTAGTCGTTTGACGCCGAGTGTTATTACTGTGACGGCGATGATTGTCAGTATGGCGCTACTTGCCTGGGCGATGAAATCGTTACCAGTAGGGACGGCTTATGCCGTGTGGACGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAGTATCCACAGGTAGTCGCGGTCCGGGCCGCAAACCAGCGCATGGCGGTATTCCCGATCGAGTGCAATAACGTTATAACCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGCAGCGCGAGT  >  NC_000913/4376838‑4377425                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                    tgtCACCGAGGGCGGCCCGATGTCTCGGGGGCCTGTTNGGTCTGGGATTTGCTTAGTTATGGCTGGTCTGCTGGAAGTGGTATGGGTCGTTGGCCTGAAATATACCCGCGGCTTTAGTCGTTTGACGCCGAGTGTTATTACTGTGACGGCGATGATTGTCAGTATGGCGCTACTTGCCTGGGCGATGAAATCGTTACCAGTAGGGACGGCTTATGCCGTGTGGACGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCg                                                                                                                                                                                                                                                                                                 <  2:46082/299‑1 (MQ=255)                               gCCTTATATGTCCTGGTTTATCTTAGTTATTGTTGGTCTTCTGGAAGTGGTTTGGGCCGTTGGCCTGAAATATACCCACGGCTTTAGTCGTTTGACGCCTAGTGTTATTACTGTGACGGCGATGATTGTCAGTATGGCGCTACTTGCCTGGGCGATGAAATCGTTACCAGTAGGGACGGCTTATGCCGTGTGGACGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGattat                                                                                                                                                                                                                                                                    <  1:166178/300‑1 (MQ=255)                                       tGTCCTGGATTATCTTAGTTATTGCTGGTCTGCTGGAAGTGGTATGGGCCGTTGGCCTGAAATATACCCACGGCTTTAGTCGTTTGACGCCGAGTGTTATTACTGTGACGGCGATGATTGTCAGTATGGCGCTACTTGCCTGGGCGATGAAATCGTTACCAGTAGGGACGGCTTATGCCGTGTGGACGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGGGGCCGCTCACCCGGTGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTTGttggaa                                                                                                                                                                                                                                                           >  2:41523/1‑296 (MQ=255)                                                               ttGGTCTGCTGAAAGTGGTATGGGCCGTTTGCCTGAAATATACCCACGGCTGTAGTCGTTTGACGCCTGGTGTTATTACTATGACGGCGATGATTGTCAGTATGGCGCTACTTGCCTGGGCGATGAAATCGTTACCAGTAGGGACGGCTTATGCCGTGTGGACGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAg                                                                                                                                                                                                                                    <  1:261975/299‑1 (MQ=255)                                                               gtGGTCTGGTGGAAGTGGTATGGGCCGTTGGCCTGAAATATACCCACGGTTTTAGTCGTTTGACGCCGAGTGTTATTACTGTGACGGCGATGATTGTCAGTATGGCGCTACTTGCCTGGGCGATGAAATCGTTACCAGTAGGGACGGCTTATGCCGTGTGGACGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAg                                                                                                                                                                                                                                    <  1:41526/299‑1 (MQ=255)                                                                  gTCTGCTGGAAGTGGTATGGGCCGTTGGCCTGAAATATACCCACGGCTTTAGTCGTTTGACGCCGAGTGTTATTACTGTGACGGCGATGATTGTCAGTATGGCGCTACTTGCCTGGGCGATGAAATCGTTACCAGTAGGGACGGCTTATGCCGTGTGGACGGGTATTGGCGCGGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGgctt                                                                                                                                                                                                                                >  1:273470/1‑300 (MQ=255)                                                                                         gTTGGCCTGAAATATACCCACGGCTTTAGTCGTTTGACGCCGAGTGTTATTACTGTGACGGCGATGATTGTCAGTATGGCGCTACTTGCCTGGGCGATGAAATCGTTACCAGTAGGGACGGCTTATGCCGTGTGGACGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGGGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCAACCACTAACTACCAGGCTGGTGTACCCCAATAAATTTACTGa                                                                                                                                                                                                         >  2:33515/1‑301 (MQ=255)                                                                                         gTTGGCCCGAAATATACCCACGGCTTTAGTCGTTTGACGCCGAGTGTTATTACTGTGACGGCGATGATTGTCAGTATGGCGCTACTTGCCTGGGCGATGAAATCGTTACCAGTAGGGACGGCTTATGCCGTGTGGACGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGa                                                                                                                                                                                                         >  1:190256/1‑301 (MQ=255)                                                                                                                              cGCCGAGTGTTATTACTGTGACGGCGATGATTGTCAGTATGGCGCTACTTGCCTGGGCGATGAAATCGTTACCAGTAGGGACGGCTTATGCCGTGTGGACGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCAtct                                                                                                                                                                     >  1:132814/1‑300 (MQ=255)                                                                                                                                                tggggtcGATGATTGGCAGGATTGCTCTGCTTGCCTGGGCGATTAAATGTTTACCAGTGGGGACGGGTTATGCCGTGTGGACTGGTATGGGGGCATTCGGCGCGGCCATGACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAg                                                                                                                                                   <  2:132805/294‑1 (MQ=255)                                                                                                                                                                  gTATGGCGCTACTTGCCTGGGCGATGAAATCGTTACCAGTAGGGTCCGCTTATGCCGTGTGGACGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCTGCTGCGCCTGGCGAGTCTGGCGTTACTTGTATTGGGGATTATTGGTCTGATACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAACCCCTTCCCGTGTCGCGACTTCCAGCATCTCCTGTTTCACTTCGTCAGAAATTGTTGGCGTGCgggg                                                                                                                                >  1:271421/1‑300 (MQ=255)                                                                                                                                                                          cgaCTGGCCTGGGCGAGGAAGTCGGTACCAGTGGGGACGGCGTATGGCGTGTGGACGGGTATTGGCGCAGTCGGCGAGGCCAGAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAGTATc                                                                                                                         <  2:13112/298‑1 (MQ=255)                                                                                                                                                                                                                           tgtgGACGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAGTATCCACAGGTAGTCGCGGTCAGGGCCGCAAACCAGCGCATGGCGGTATTCCCg                                                                       >  1:43715/1‑301 (MQ=255)                                                                                                                                                                                                                           tgagggcGGGTATTGGCGCAGTCGGCGCGGGCATAACCGGCATTGTGCGGGTCGGGGAGGCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACGAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAGTATCCACAGGTAGTCGCGGTCCGGGCCGCAAACCAGCGCATGGCGGTATTccc                                                                        <  1:59509/294‑1 (MQ=255)                                                                                                                                                                                                                              gaaCGGGTATGGGCGCCATGTGCGCGGCCATAAGCGGCATTAGGCTGCTCGTGGAGTGCGCTAACCCGATGCGCCTGGGGAGTCTGTCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAGATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGGGAGTATCCACAGGTAGTCGCGGTCCGGGCCGCAAACCAGCGCATGGCGGTATTCCCGAt                                                                     <  1:237764/298‑1 (MQ=255)                                                                                                                                                                                                                                     tATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGCCTTCCAGCATCCCCTTTTTCACTTCGTAAGCAATGGTTGGCGTGCGGACACGTATCCACCGTTCGTCGCGGTCGGGGCCGACAACCCGCCCATGTCGGTTTTCCCgtgcgctggca                                                             >  2:181086/1‑291 (MQ=255)                                                                                                                                                                                                                                                                  gaatttggctggtCGGTGAGACCGCAAACCCGATGAGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAGTATCCACAGGTAGTCGCGGTCCGGGCCGCAAACCAGCGCATGGCGGTATTCCCGATCGAGTGCAATAACGTTATAACCGCCATAGAAAGGAc                                 <  2:190246/293‑1 (MQ=255)                                                                                                                                                                                                                                                                                           aaaCCCGAGGCGCCGGGGGGGGCTGGGGTTAATCGTATTGTGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTTAACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTGGGCGTGCGGGAGAGTATCCACAGGTAGTCGCGGTCCGGGCCGCAAACCAGCGCATGGCGGTATTCCCGATCGAGTGCAATAACGTTATAACCGCCATAGAAAGGACCAAAGAATGACACTTTcagcgcagcg       <  2:273458/300‑1 (MQ=255)                                                                                                                                                                                                                                                                                                cGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTTGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACTAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGGTGTCGTGCGGGAGAGTATCCACCGGTAGTCGCGGTCCGGGCCGCAAACCCGCGCATGGCGGTTTTCCCGATCGACTGCAATAACGTTATATCCGCCCTACAACGGCCCAAAGAATGTCACTTTcacattagtgcgagt  >  2:131585/1‑288 (MQ=255)                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                    TTTCACCGGGGACGGCCCCAATTCTCCGGAGCCTGATATGTCCTGGATTATCTTAGTTATTGCTGGTCTGCTGGAAGTGGTATGGGCCGTTGGCCTGAAATATACCCACGGCTTTAGTCGTTTGACGCCGAGTGTTATTACTGTGACGGCGATGATTGTCAGTATGGCGCTACTTGCCTGGGCGATGAAATCGTTACCAGTAGGGACGGCTTATGCCGTGTGGACGGGTATTGGCGCAGTCGGCGCGGCCATAACCGGCATTGTGCTGCTCGGTGAGTCCGCTAACCCGATGCGCCTGGCGAGTCTGGCGTTAATCGTATTGGGGATTATTGGTCTGAAACTCAGCACTCACTAACTACCAGGCTGCTGTACCCAAATAAATTTACTGACATCAAACCCTTCCCGGGTCGCGACTGCCAGCATCTCCTGTTTCACTTCGTCAGAAATGGTTGGCGTGCGGGAGAGTATCCACAGGTAGTCGCGGTCCGGGCCGCAAACCAGCGCATGGCGGTATTCCCGATCGAGTGCAATAACGTTATAACCGCCATAGAAAGGACCAAAGAATGACACTTTCAGCGCAGCGCGAGT  >  NC_000913/4376838‑4377425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.