Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503	1979278	776	56 [0]	[0] 57	insB1–insA	insB1, insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	55 (1.070)	50/584	0.0	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

CCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATA  >  NC_000913/1978206‑1978801                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                            cccaAAATTACCAACCTTATTTTTATGCGGTTTCACCGCACCCCGGGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCAATAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtata                                                                                                                                                                                                                                                                                                         <  2:424130‑M1/301‑5 (MQ=255)        aaacCAACATAAAATTTAAGCTGATGCACCGCAACCCGTGATGTCGCCGAGAAGCCCCGGTAAAAAATAATTGGCATTAGAATAGTTGCGATAAGCTGCAATAAGCATAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                                                                                                                                                                                  <  2:477898‑M1/300‑12 (MQ=255)          cccaCCTTTAATTTTATGCGCTTTAACCGGACCCCGTTGTGTCGCAGGGAAGGCCCTGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTAACGACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact                                                                                                                                                                                                                                                                                                <  2:309936‑M1/300‑14 (MQ=255)          aCCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGTGAAGCCCCTGTAAAAAATAATTAGCCTTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact                                                                                                                                                                                                                                                                                                <  1:79403‑M1/301‑14 (MQ=255)                 ttATTTTTATGCGGTTTCACCGGACCCCGTGATGTCTACGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt                                                                                                                                                                                                                                                                                         <  1:253458‑M1/301‑21 (MQ=255)                  tATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGTGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataatgcatagttttgtttt                                                                                                                                                                                                                                                                                        >  1:90212‑M1/1‑280 (MQ=255)                     ttttATGCGGTTTCACCGCACCCCGTTATGTTGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                                                                                                                                                                                     <  1:491637‑M1/301‑25 (MQ=255)                                  cACCGAACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                                                                                                                                                                                        <  2:101080‑M1/301‑38 (MQ=255)                                         ccccGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGAGTGATGCAGATCACACAAAACACTCAATTACTTAAAATAAATGtataagtcatactttttttttggttgtatttcactctgttaaaa                                                                                                                                                                                                                                                                 >  2:414828‑M1/1‑257 (MQ=255)                                              tGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCTTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGCTTTTCAATAATGCGTGATGCAGACCACACAACACACTCAATTACTTAACATAAATGtataagtcatactattgttttcggtgtatttcaatctgttaaaaagttt                                                                                                                                                                                                                                                            >  1:180976‑M1/1‑252 (MQ=255)                                                ctatcgcCCGGAAGCCCCAGTAAAAAATAATTATGATATGAATAGTTGCGATAAGCTGCAAGAAGCATAACCACCTTTTTTGTTTAATATGTCCTTACAAATATAAATGGGTCTGTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                                                                                                                                                                                           <  2:432865‑M1/297‑51 (MQ=255)                                                   tCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                                                                                                                                                                                        <  1:263361‑M1/300‑54 (MQ=255)                                                   tCGCCGGGAAGCCCCGGTAAAAAATAATTAACATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCGTTACACTTATCTAAGATTTTTCCGAAGTCGACGCGACTGTACTCGTCACTACACGCACATACAACGGAGGGGAGCTACGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                                                                                                                                                                                        <  1:425063‑M1/300‑54 (MQ=255)                                                                       aaaaaaAGTAGCAATGGAATAGTTGCGATAAGCTGCANAAAGCAAAACACCCTTATTGGTTTAATATGGCCTTCAAAATAGAAATGGGTCTTTACAATTATCTAAGATTTTTCCTAAATCGACGGAACTGTACTCGTCACTACACGCACATACGACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatg                                                                                                                                                                                                                                   <  2:77583‑M1/301‑75 (MQ=255)                                                                                   aTTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGCTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcataattttgtttttgttgtattttaacctgttcaaaagtttttcgttacgctagtaagcaaaaattaaaaaggaataa                                                                                                                                                                                                                       >  2:391323‑M1/1‑215 (MQ=255)                                                                                                      gCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAAAACTCAATTACTTAACATAACTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaatgtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggattgttgcg                                                                                                                                                                                                     >  1:353646‑M1/1‑196 (MQ=255)                                                                                                             tAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttacatctgttaaaatgtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggttgttccgcacagcca                                                                                                                                                                                             >  1:331641‑M1/1‑189 (MQ=255)                                                                                                               aGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATAGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAAACCTCAATTACTTAACATAAATGtataagtaatacttttgttatgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataataaaaatgggattttgcgaacagtacaa                                                                                                                                                                                           >  2:338433‑M1/1‑187 (MQ=255)                                                                                                                     accaccTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact                                                                                                                                                                                     <  1:391332‑M1/301‑121 (MQ=255)                                                                                                                                     aaTATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTAAACATAAATGaataattaatccttttgttttggtggtctttcaatcagtacaaaagtttttcgctacgatagtcagcaaatatgaaacaggaataatagaaatgagatgtaggccacattaaaaataaataaccgtaaaaaatcaa                                                                                                                                                                     >  2:418180‑M1/1‑165 (MQ=255)                                                                                                                                         tGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATCTTCAATAATGCGTGATGCAGATCACACAAAACACCCAATTAATTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgatacgctagcaagcaaaaatgaaacaggaataatcaaaatggaatgttgctcacagtcaaaataactcaccgtaaataatcatctg                                                                                                                                                                  >  1:416170‑M1/1‑161 (MQ=255)                                                                                                                                                aCAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaat                                                                                                                                                          <  1:414837‑M1/301‑148 (MQ=255)                                                                                                                                                   acgtgtgctcttccgatctacttatctaagatttttcctaAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataa                                                                                                                                                        <  1:517077‑M1/281‑150 (MQ=255)                                                                                                                                                   aaTAGAAATGGGTCCTTACACTTAACTAAGATTTTTCCTAAATCGACGCGACTGTACTCGTCACTACACGCACATACAACGGAAGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataat                                                                                                                                                       <  2:90211‑M1/301‑151 (MQ=255)                                                                                                                                                             ggTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATCTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtaaaaataactcacagtaaataatcatatgcaataaaaaatcactttaata                                                                                                                                             >  2:80888‑M1/1‑141 (MQ=255)                                                                                                                                                                   tACACTTAGCTAAGAGTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTAAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataaggcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaatac                                                                                                                                       <  1:421530‑M1/301‑167 (MQ=255)                                                                                                                                                                      acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaacaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataaagatcggaagagcgtcgttt                                                                                                                                    >  2:517066‑M1/1‑132 (MQ=255)                                                                                                                                                                           tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGAGGGCTGCGATTTTAAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataag                                                                                                                               <  1:418190‑M1/301‑175 (MQ=255)                                                                                                                                                                              aaGATTTTTCCTAAATCGACGCAACCGCACTCGTCACTACATGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGTTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataaggcatacttttgttttgggtgtatttcaatctgttaaaaagttcttcgctacgctagcaagcaaaaatgaaataggaacaatcgaaatgggatgttgcgcacagtcaaaataactcaccgaaaataatcatctgctataaataatcactttcatgcaataccagctaagcta                                                                                                                            >  1:361068‑M1/1‑124 (MQ=255)                                                                                                                                                                                       ccTAAATCAACTAAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACTCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaagaccagataagctatttttaaac                                                                                                                   <  1:235631‑M1/301‑187 (MQ=255)                                                                                                                                                                                                    ctctgTCCACGTAACTAAACGCACATAGAACGGAGGGGGGCTGCGAATTTCAATAATGCGTGATGCAGATCAAAAAAAACACTGAAATACTTAAAACAACTGtataagtcatacttttgttttaggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgc                                                                                                      <  2:416161‑M1/299‑200 (MQ=255)                                                                                                                                                                                                       cacgaccacacttccgatctatgagaacggaggggggcttcgattttaaataATGAGTGATACAGATAAAACAAAACACTCAATTACTTAACATAAATGtataaatcatacttttgtgttgggtgtatttcaatctgttaaaaagtttttcgctacgctaacaagcaaaaatgaaacaggaataatctaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcaca                                                                                                   <  2:472179‑M1/276‑203 (MQ=255)                                                                                                                                                                                                           cTCGTCACTACACGCTCATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGAACACACAAAACACTCAATTACTTAACATAAATGtataagtcatatttctgttttggttgtatttcaatctgttaaaaagtttttcgttacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatatgctataaataatcactttcatgcaataccagataagctatttttaaaaagacacttaccgaacaacaa                                                                                               >  2:250824‑M1/1‑95 (MQ=255)                                                                                                                                                                                                              gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaa                                                                                              >  1:330251‑M1/1‑92 (MQ=255)                                                                                                                                                                                                                   tACACGCACATACAACGGAGGAGGGCTGCGATCTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaatta                                                                                       <  1:80889‑M1/301‑215 (MQ=255)                                                                                                                                                                                                                   aacacgCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaatta                                                                                       <  1:338440‑M1/300‑215 (MQ=255)                                                                                                                                                                                                                         cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaataca                                                                                 >  1:185600‑M1/1‑81 (MQ=255)                                                                                                                                                                                                                           caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGCTGCAGATCACACAAAACACCCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgtacagttaaaataactcaccgtaaataatcatctgctataaataatcacttttatgcactaccagataagctatttttaaacataaatttaacgcatacgatcggaagagcacacgtt                                                                               >  1:472189‑M1/1‑79 (MQ=255)                                                                                                                                                                                                                             tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaaga                                                                             >  1:287131‑M1/1‑77 (MQ=255)                                                                                                                                                                                                                                               aaaattacaattaagCGTTAAGCAAAGCACAAAAAACACTAAAATACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaactta                                                           <  2:331634‑M1/294‑243 (MQ=255)                                                                                                                                                                                                                                                    ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaataaacttaatgtt                                                      >  2:397294‑M1/1‑54 (MQ=255)                                                                                                                                                                                                                                                     ctctttccctacacgacgctcttccgatctcactcaattacttaacataaatgtataagtcatacttttgttttgggtgtatttcaatctggtaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgtta                                                     <  2:329180‑M1/271‑249 (MQ=255)                                                                                                                                                                                                                                                         taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagaaacttaacgcacaacaaaataattaaatacaaaaaaaggcaacaatcaacttaatgttaatga                                                 >  2:409769‑M1/1‑49 (MQ=255)                                                                                                                                                                                                                                                             gCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaaatg                                             >  1:397978‑M1/1‑45 (MQ=255)                                                                                                                                                                                                                                                                tGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaaatgttt                                          >  1:499418‑M1/1‑42 (MQ=255)                                                                                                                                                                                                                                                                 aatGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaaatgtttt                                         <  1:397303‑M1/300‑261 (MQ=255)                                                                                                                                                                                                                                                                   tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtcttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagaacattaccgcacaacaaactaattaaaaccaaaaaaagacaacaataacattaatgttaatgaaattttttaa                                       >  2:387284‑M1/1‑39 (MQ=255)                                                                                                                                                                                                                                                                   cgacgctcttccgatctactcaattacttaacataaATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctactataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaaatgttttac                                       <  2:221261‑M1/284‑263 (MQ=255)                                                                                                                                                                                                                                                                          cacacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaaatgttttacatatatt                                >  1:363909‑M1/1‑32 (MQ=255)                                                                                                                                                                                                                                                                              caAAACACTCAATTACTTAACATAAATGtataagtcatacctttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaaatgttttacatatattaac                             >  1:192771‑M1/1‑28 (MQ=255)                                                                                                                                                                                                                                                                                   cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagccaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaataaactaattaaatacaaagaaaggcaacaatcaacttaatgataagatcggaagagcacacgtctgaactccag                       >  1:329185‑M1/1‑23 (MQ=255)                                                                                                                                                                                                                                                                                   aactCAATTACTGAAAATAAATGtataagtcataattttgttgtaagtgtatttcaatctattaaaaaatttttcgctacgctagcaagcaaaaatgaaacaagaaaaatagaaatgggatattacgcacagtcaaaataactcaacgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaaatgttttacatatattaaccacttg                       <  2:361061‑M1/300‑279 (MQ=255)                                                                                                                                                                                                                                                                                    acTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagttaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaattccagataagctatttttaaacagacactcactgcacaacaaactaattaaatacaaagaaaggcaacaataaacttaatgttaatgaaatgttttacagatcggaagagcaca                       >  1:221264‑M1/1‑22 (MQ=255)                                                                                                                                                                                                                                                                                           tatttaacATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaaatgttttacatatattaaccacttgtttaatgc               <  2:22151‑M1/298‑287 (MQ=255)                                                                                                                                                                                                                                                                                                aaCATAAATGtataagtcatactttagttttggatgtatgtcaaactgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtagataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaaatgttttacatatattaaccacttgtttaatgcggaga          <  2:180974‑M1/301‑292 (MQ=255)                                                                                                                                                                                                                                                                                                        tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagaaaaaatgaaacaggaatgatcgagatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaaatgttttacatatattaaccacttgtttaatgcggagaatcagtac  <  1:250827‑M1/301‑300 (MQ=255)                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                            CCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATA  >  NC_000913/1978206‑1978801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑