mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 37.1% | 19.3 / 21.8 | 36 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 32.4% | 27.0 / 20.1 | 36 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 23.5% | 39.8 / 13.0 | 35 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3467373 = | 67 (1.260) | 3 (0.060) | 3/588 | 7.0 | 4.3% | coding (2481/2694 nt) | chiA | periplasmic endochitinase |
| ? | NC_000913 | 3467392 = | 69 (1.330) | coding (2462/2694 nt) | chiA | periplasmic endochitinase | |||||
| * | ? | NC_000913 | = 2729774 | 10 (0.190) | 5 (0.100) | 3/590 | 7.0 | 18.6% | noncoding (1384/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 4036936 = | 34 (0.650) | noncoding (1406/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 2729774 | 10 (0.190) | 5 (0.100) | 3/590 | 7.0 | 33.7% | noncoding (1384/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 3427357 | NA (NA) | noncoding (1406/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | = 2417945 | 61 (1.150) | 3 (0.060) | 3/582 | 7.0 | 5.0% | coding (865/1521 nt) | yfcC | putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein |
| ? | NC_000913 | = 2418023 | 54 (1.050) | coding (943/1521 nt) | yfcC | putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein | |||||
| * | ? | NC_000913 | 1243718 = | 51 (0.960) | 3 (0.060) | 3/586 | 7.0 | 5.6% | coding (539/612 nt) | emtA | lytic murein endotransglycosylase E |
| ? | NC_000913 | 1243755 = | 52 (1.000) | coding (576/612 nt) | emtA | lytic murein endotransglycosylase E | |||||
| * | ? | NC_000913 | 1002641 = | 48 (0.910) | 3 (0.060) | 3/590 | 7.0 | 5.9% | coding (835/1071 nt) | elfG | putative fimbrial‑like adhesin protein |
| ? | NC_000913 | 1002700 = | 49 (0.940) | coding (894/1071 nt) | elfG | putative fimbrial‑like adhesin protein | |||||
| * | ? | NC_000913 | = 3667948 | 75 (1.410) | 3 (0.060) | 3/598 | 7.1 | 3.9% | coding (1241/1398 nt) | yhjA | putative cytochrome C peroxidase |
| ? | NC_000913 | 3667953 = | 75 (1.420) | coding (1236/1398 nt) | yhjA | putative cytochrome C peroxidase | |||||