New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	603377 =	153 (1.220)	4 (0.040)	4/270	11.5	2.8%	intergenic (+42/+39)	pheP/ybdG	phenylalanine transporter/mechanosensitive channel protein, miniconductance
	?	NC_000913	603410 =	144 (1.270)					intergenic (+75/+6)	pheP/ybdG	phenylalanine transporter/mechanosensitive channel protein, miniconductance
Rejected: Position hash score below cutoff.

CCGCTCGAGATCTACGCGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/603586‑603377 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgagagcggtttTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCACCTGGAGCC  >  NC_000913/603410‑603608                                                                                                                                                                                                                                                                                                                                                                                                                           CCGCTCGAGATCTACGCGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATG                                                                                                                                                                                                                   <  4:308648/200‑1        AGATCTACGCGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGG                                                                                                                                                                                                            <  4:95938/200‑1         GATCTACGCGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGT                                                                                                                                                                                                           >  4:701735/1‑200          ATCTACGCGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTT                                                                                                                                                                                                          >  4:185733/1‑200           TCTACGCGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTT                                                                                                                                                                                                         >  4:241283/1‑200                                             ATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAG                                                                                                                                                                       <  4:210196/200‑1                                                   AAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATG                                                                                                                                                                                                                   <  2:776064/150‑1                                                     GCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAG                                                                                                                                                                                                                 <  2:197025/150‑1                                                      CATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTACTTAAAAAAACCGCTCTCATCGAATGGATGAGA                                                                                                                                                                                                                >  2:702657/1‑150                                                        TTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGC                                                                                                                                                                                                              <  2:363243/150‑1                                                            GGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTT                                                                                                                                                                                                          >  2:827847/1‑150                                                            GGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATG                                                                                                                                                                                                                   <  3:22879/141‑1                                                            GGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATG                                                                                                                                                                                                                   >  3:545310/1‑141                                                                GATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTTTTT                                                                                                                                                                                                      >  2:840092/1‑150                                                                   ATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGA                                                                                                                                                                                                                     >  1:785459/1‑132                                                                     ATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGAC                                                                                                                                               <  4:840159/200‑1                                                                     ATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATG                                                                                                                                                                                                                   <  1:832086/132‑1                                                                      TTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTT                                                                                                                                                                                                         <  3:30786/141‑1                                                                             ACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGT                                                                                                                                                                                                           >  1:644321/1‑132                                                                                                         TCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCAT                                                                                                                                                             <  2:374242/150‑1                                                                                                                                                                                                          GAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCAC          <  4:314263/200‑1                                                                                                                                                                                                          GAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCAC          <  4:726146/200‑1                                                                                                                                                                                                          GAGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCA                                                            >  2:95199/1‑150                                                                                                                                                                                                           AGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCACC         <  4:776128/200‑1                                                                                                                                                                                                           AGCGGTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATAT                                                                    <  3:818821/141‑1                                                                                                                                                                                                              GGTTTTTTTAATTGCTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACC                                                        <  2:669347/150‑1                                                                                                                                                                                                               GTTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCACCTGGA     >  4:482764/1‑200                                                                                                                                                                                                                TTTTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCAC                                                      <  2:1097304/150‑1                                                                                                                                                                                                                  TTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCACCTGGAGCC  <  4:184629/200‑1                                                                                                                                                                                                                  TTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCAT                                                                      >  1:582377/1‑132                                                                                                                                                                                                                                                                                                                                                                                                                           CCGCTCGAGATCTACGCGTTTACTAACACCGTGGTGTGGCTGGAATATGAAAGCATTCAGGCTGATATATTCGATCACATATTTGCGATTGTCGAAGAGTTTGGTCTGCGACTTCATCAGTCGCCAACCGGCAATGATATTCGCTCTCTGGCGGGTGCATTTAAGCAGTAATTAAAAAAACCGCTCTCATCGAATGGATGAGAGCGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/603586‑603377 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgagagcggtttTTTTAATTACTGCTTAAATGCACCCGCCAGAGAGCGAATATCATTGCCGGTTGGCGACTGATGAAGTCGCAGACCAAACTCTTCGACAATCGCAAATATGTGATCGAATATATCAGCCTGAATGCTTTCATATTCCAGCCACACCACGGTGTTAGTAAACGCGTAGATCTCGAGCGGTAAACCGTTATCACCTGGAGCC  >  NC_000913/603410‑603608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.