New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3368970 =	142 (1.140)	3 (0.030)	3/274	12.4	2.1%	intergenic (+16/+44)	yhcG/yhcH	DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily
	?	NC_000913	3368995 =	144 (1.250)					intergenic (+41/+19)	yhcG/yhcH	DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily
Rejected: Position hash score below cutoff.

ATTATCAGCTTTGCAGCACCATTGATAACGAGCAAGCCATCATCTTAAAACCGGGAATGTTCGCCGTGTTTATGCCAGGTGAACCGCATAAACCAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3369180‑3368970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtctgcagaatCTTTAAAACGAACTAAGTTTTAAGCCATTAAATCAGCCTTAACCTTCACCACAACCTTTTTAATCTCTCCAGGCTCGCCGACAACGCATCCTGGTTTATGCGGTTCACCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGA  >  NC_000913/3368995‑3369138                                                                                                                                                                                                                                                                                                                                                                     ATTATCAGCTTTGCAGCACCATTGATAACGAGCAAGCCATCATCTTAAAACCGGGAATGTTCGCCGTGTTTATGCCAGGTGAACCGCATAAACCAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACT                                                                                                                                                             >  4:460531/1‑200         CTTTGCAGCACCATTGATAACGAGCAAGCCATCATCTTAAAACCGGGAATGTTCGCCGTGTTTATGCCAGGTGAACCGCATAAACCAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAG                                                                                                                                                     <  4:723735/200‑1          TTTGCAGCACCATTGATAACGAGCAAGCCATCATCTTAAAACCGGGAATGTTCGCCGTGTTTATGCCAGGTGAACCGCATAAACCAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAGA                                                                                                                                                    <  4:275408/200‑1                                           TCTTAAAACCGGGAATGTTCGCCGTGTTTATGCCAGGTGAACCGCATAAACCAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAGAATCTTTAAAACGAACTAAGTTTTAAGCCATTAA                                                                                                                   >  4:181350/1‑200                                                    CGGGAATGTTCGCCGTGTTTATGCCAGGTGAACCGCATAAACCAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTG                                                                                                                                                            <  2:401041/150‑1                                                          TGTTCGCCGTGTTTATGCCAGGTGAACCGCATAAACCAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCA                                                                                                                                                      >  2:349027/1‑150                                                           GTTCGCCGTGTTTATGCCAGGTGAACCGCATAAACCAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAG                                                                                                                                                     <  2:460496/150‑1                                                                    GTTTATGCCAGGTGAACCGCATAAACCAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAG                                                                                                                                                     <  3:450663/141‑1                                                                      gTATGCCAGGTGAACCGCATAAACGAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTG                                                                                                                                                            <  1:817095/131‑1                                                                       TATGCCAGGTGAACCGCATAAACCAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGT                                                                                                                                                           >  1:355627/1‑132                                                                         TGCCAGGTGAACCGCATAAACCAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCT                                                                                                                                                         >  1:709317/1‑132                                                                              GGTGAACCGCATAAACCAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAGA                                                                                                                                                    >  4:858345/1‑132                                                                              GGTGAACCGCATAAACCAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAGA                                                                                                                                                    >  1:98282/1‑132                                                                              GGTGAACCGCATAAACCAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAGA                                                                                                                                                    <  2:858278/132‑1                                                                                                             GCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAGAATCTTTAAAACGAACTAAGTTTTAAGCCATTAAATCAGCC                                                                                                            <  3:231626/141‑1                                                                                                                  CCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAGAAT                                                                                                                                                  <  3:26334/98‑1                                                                                                                  CCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAGAAT                                                                                                                                                  >  1:26334/1‑98                                                                                                                                  AGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAGA                                                                                                                                                    <  2:443761/80‑1                                                                                                                                  AGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAGA                                                                                                                                                    >  4:443796/1‑80                                                                                                                                         GGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGC                                                                                                                                                       >  3:370109/1‑70                                                                                                                                         GGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGC                                                                                                                                                       <  1:370095/70‑1                                                                                                                                              AGGTTAAGGCTTATTTAATGTCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAGAATCTTTAAAACGAACTAAGTTTTAAGCCATTAAATCAGCCTTAACCTTCACCACAACCTTTTTAATCTCTCCAGGCTCGCCG                                                                  <  2:181345/150‑1                                                                                                                                                                                                        TGTCTGCAGAATCTTTAAAACGAACTAAGTTTTAAGCCATTAAATCAGCCTTAACCTTCACCACAACCTTTTTAATCTCTCCAGGCTCGCCGACAACGCATCCTGGTTTATGCGGTTCACCTGGCATAAACACGGCGAACATTCCCGGTT        <  2:766304/150‑1                                                                                                                                                                                                        TGTCTGCAGAATCTTTAAAACGAACTAAGTTTTAAGCCATTAAATCAGCCTTAACCTTCACCACAACCTTTTTAATCTCTCCAGGCTCGCCGACAACGCATCCTGGTTTATGCGGTTCACCTGGCATAAACA                          <  1:38607/132‑1                                                                                                                                                                                                              CAGAATCTTTAAAACGAACTAAGTTTTAAGCCATTAAATCAGCCTTAACCTTCACCACAACCTTTTTAATCTCTCCAGGCTCGCCGACAACGCATCCTGGTTTATGCGGTTCACCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGA  <  2:91265/150‑1                                                                                                                                                                                                              CAGAATCTTTAAAACGAACTAAGTTTTAAGCCATTAAATCAGCCTTAACCTTCACCACAACCTTTTTAATCTCTCCAGGCTCGCCGACAACGCATCCTGGTTTATGCGGTTCACCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGA  <  2:76374/150‑1                                                                                                                                                                                                              CAGAATCTTTAAAACGAACTAAGTTTTAAGCCATTAAATCAGCCTTAACCTTCACCACAACCTTTTTAATCTCTCCAGGCTCGCCGACAACGCATCCTGGTTTATGCGGTTCACCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGA  <  2:720795/150‑1                                                                                                                                                                                                                 AATCTTTAAAACGAACTAAGTTTTAAGCCATTAAATCAGCCTTAACCTTCACCACAACCTTTTTAATCTCTCCAGGCTCGCCGACAACGCATCCTGGTTTATGCGGTTCACCTGGCATAAACACGGCGAACA                 <  1:559399/132‑1                                                                                                                                                                                                                                                                                                                                                                     ATTATCAGCTTTGCAGCACCATTGATAACGAGCAAGCCATCATCTTAAAACCGGGAATGTTCGCCGTGTTTATGCCAGGTGAACCGCATAAACCAGGATGCGTTGTCGGCGAGCCTGGAGAGATTAAAAAGGTTGTGGTGAAGGTTAAGGCTGATTTAATGGCTTAAAACTTAGTTCGTTTTAAAGATTCTGCAGACACTGTCTGCAGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3369180‑3368970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtctgcagaatCTTTAAAACGAACTAAGTTTTAAGCCATTAAATCAGCCTTAACCTTCACCACAACCTTTTTAATCTCTCCAGGCTCGCCGACAACGCATCCTGGTTTATGCGGTTCACCTGGCATAAACACGGCGAACATTCCCGGTTTTAAGA  >  NC_000913/3368995‑3369138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.