Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4541560	4541926	367	59 [45]	[47] 53	fimB/fimE	tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA

CTTAAAATCTCCTGTTTCCGCACTTTTTTCTTTATTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGG  >  NC_000913/4541766‑4542103                                                                                                                                                                  |                                                                                                                                                                                 cTTAAAATCTCCTGTTTCCGCACTTTTTTCTTTATTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTgg                                                                                                                                            >  4:8774/1‑200 (MQ=255)                                                                     cTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTactact                                                                        >  4:741167/1‑200 (MQ=255)                                                                          gTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCAc                                                                                                                                                                          <  2:668229/97‑1 (MQ=255)                                                                          gTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCAc                                                                                                                                                                          >  4:668293/1‑97 (MQ=255)                                                                                       aaatcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAAcgtcgt                                                      >  4:829493/1‑200 (MQ=255)                                                                                                                caTCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCaa                                                                                                 >  1:725347/1‑132 (MQ=255)                                                                                                                                     gTATGATATTTAATGTAATTGACTGATAGCCACATCATTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAgg                                                                                                            >  1:195379/1‑100 (MQ=255)                                                                                                                                     gTATGATATTTAATGTAATTGACTGATAGCCACATCATTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAgg                                                                                                            <  3:195384/100‑1 (MQ=255)                                                                                                                                     gTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAatat                                                                                             >  4:591668/1‑115 (MQ=255)                                                                                                                                     gTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAatat                                                                                             <  2:591603/115‑1 (MQ=255)                                                                                                                                       aTGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGc                                                                                                                                          <  1:461164/68‑1 (MQ=255)                                                                                                                                       aTGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGc                                                                                                                                          >  3:461182/1‑68 (MQ=255)                                                                                                                                          atatTTAATGTAATTGACTGATAGCCACATCACTCCgtg                                                                                                                                                                    <  2:18556/39‑1 (MQ=255)                                                                                                                                          atatTTAATGTAATTGACTGATAGCCACATCACTCCgtg                                                                                                                                                                    >  4:18557/1‑39 (MQ=255)                                                                                                                                          atatTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAAttt                                                                                                                                    <  4:800584/71‑1 (MQ=255)                                                                                                                                          atatTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAAttt                                                                                                                                    >  2:800519/1‑71 (MQ=255)                                                                                                                                          atatTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTa                                                              >  3:482087/1‑141 (MQ=255)                                                                                                                                           tatTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGt                                                                                                                                                              <  3:700631/44‑1 (MQ=255)                                                                                                                                           tatTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGt                                                                                                                                                              >  1:700597/1‑44 (MQ=255)                                                                                                                                           tatTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGTGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAgg                                                                                 <  3:779715/121‑1 (MQ=255)                                                                                                                                           tatTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAgg                                                                                                            >  4:706054/1‑94 (MQ=255)                                                                                                                                           tatTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAgg                                                                                                            <  2:705992/94‑1 (MQ=255)                                                                                                                                           tatTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAgg                                                                                 >  1:779678/1‑121 (MQ=255)                                                                                                                                           tatTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACgggg  >  4:705380/1‑200 (MQ=255)                                                                                                                                            atTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAatat                                                                                             >  1:140117/1‑108 (MQ=255)                                                                                                                                            atTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAatat                                                                                             <  3:140120/108‑1 (MQ=255)                                                                                                                                            atTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTActacta                                                                       <  1:172680/130‑1 (MQ=255)                                                                                                                                            atTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtg                                                                    <  2:647431/133‑1 (MQ=255)                                                                                                                                            atTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtg                                                                    >  4:647496/1‑133 (MQ=255)                                                                                                                                            atTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGc                >  4:247132/1‑185 (MQ=255)                                                                                                                                            atTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGCTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTActacta                                                                       >  3:172684/1‑130 (MQ=255)                                                                                                                                               tAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtg                                                                    <  1:711681/130‑1 (MQ=255)                                                                                                                                               tAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtg                                                                    >  3:711716/1‑130 (MQ=255)                                                                                                                                                   gTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAgg                                                                                                            >  4:552545/1‑86 (MQ=255)                                                                                                                                                   gTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAgg                                                                                                            <  2:552481/86‑1 (MQ=255)                                                                                                                                                   gTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTattcat                                                                                                     >  2:132075/1‑93 (MQ=255)                                                                                                                                                   gTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTattcat                                                                                                     <  4:132078/93‑1 (MQ=255)                                                                                                                                                   gTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGtactac                                                                         <  4:951218/121‑1 (MQ=255)                                                                                                                                                   gTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGtactac                                                                         >  2:951146/1‑121 (MQ=255)                                                                                                                                                   gTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTa                                                              >  1:5519/1‑132 (MQ=255)                                                                                                                                                   gTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTa                                                              >  1:342306/1‑132 (MQ=255)                                                                                                                                                   gTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCg                                            >  2:58608/1‑150 (MQ=255)                                                                                                                                                               tAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTActacta                                                                       <  3:10459/111‑1 (MQ=255)                                                                                                                                                               tAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTActacta                                                                       >  1:10459/1‑111 (MQ=255)                                                                                                                                                                aGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGt                                                                                                           >  1:657448/1‑74 (MQ=255)                                                                                                                                                                aGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCt                                                 >  1:784146/1‑132 (MQ=255)                                                                                                                                                                aGCAACAGCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGAACGATTGAGGTTTCCTATAGGt                                                                                                           <  3:657479/74‑1 (MQ=255)                                                                                                                                                                  ccACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtg                                                                    >  3:629982/1‑111 (MQ=255)                                                                                                                                                                  ccACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATtg                                                                    <  1:629959/111‑1 (MQ=255)                                                                                                                                                                  ccACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTa                                               >  1:60810/1‑132 (MQ=255)                                                                                                                                                                  ccACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTa                                               >  1:236897/1‑132 (MQ=255)                                                                                                                                                                  ccACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAgg                             >  2:789144/1‑150 (MQ=255)                                                                                                                                                                  ccACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCatgat                      <  4:789208/157‑1 (MQ=255)                                                                                                                                                                  |                                                                                                                                                                                 CTTAAAATCTCCTGTTTCCGCACTTTTTTCTTTATTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGG  >  NC_000913/4541766‑4542103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.