New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 137328484 (0.820)3 (0.030) 3/290 12.3 3.8% coding (63/882 nt) ycjO putative sugar ABC transporter permease
?NC_000913 = 1373292 74 (0.760)coding (71/882 nt) ycjO putative sugar ABC transporter permease
Rejected: Position hash score below cutoff.

TCTCTACTACGCTGCAAGCGAGCCAGAAAAAACTGGATGAACTGATCGAACAGCACTAAACCCAGGACAGGAATCCGCAATGAACAGGCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1373143‑1373284
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccagcAGTAATAAGCTGGGCGCGAGAAGCAGCAGCGCAAAGGGCATATCGGAACGACCTGAAAAAAGCCTGTTCATTGCGGATTCCTGTCCTGGGTTTAGTGCTGTTCGATCAGTTCATCCAGTTTTTTCTGGCTCGCTTGCAGCGTAGTAGAG  <  NC_000913/1373292‑1373144
                                                                                                                                                                                                                                                                                                   
TCTCTACTACGCTGCAAGCGAGCCAGAAAAAACTGGATGAACTGATCGAACAGCACTAAACCCAGGACAGGAATCCGCAATGAACAGGCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAG                                                                                                                                                        <  1:75744/141‑1
 CTCTACTACGCTGCAAGCGAGCCAGAAAAAACTGGATGAACTGATCGAACAGCACTAAACCCAGGACAGGAATCCGCAATGAACAGGCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGC                                                                                                                                                       >  1:465871/1‑141
                                                                                                 GGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGCAGTAATAAGCTGGGCGCGAGAAGCAGCAGCGCAAAGGGCATAACGGAACGACCTGAAAAAAGCCTGTTCATTGCGGATTCCTGTCCTGGGTTGAGT                                                       >  1:341326/1‑141
                                                                                                         CGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGCAGTAATAAGCTGGGCGCGAGAAGCAGCAGCGCAAAGGGCATATCGGAACGACCTGAAAAAAGCCTGTTCATTGCGGATTCCTGTCTTGGGTTTAGTGC                                                     >  3:43479/1‑135
                                                                                                         CGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGCAGTAATAAGCTGGGCGCGAGAAGCAGCAGCGCAAAGGGCATATCGGAACGACCTGAAAAAAGCCTGTTCATTGCGGATTCCTGTCCTGGGTTTAGTGC                                                     <  4:43479/135‑1
                                                                                                                                       GCCCAGCAGTAATAAGCTGGGCGCGAGAAGCAGCAGCGCAAAGGGCATATCGGAACGACCTGAAAAAAGCCTGTTCATTGCGGATTCCTGTCCTGGGTTTAGTGCTGCTCGATCAGTTCATCCAGTTTTTTC                          >  2:619704/1‑132
                                                                                                                                         CCAGCAGTAATAAGCTGGGCGCGAGAAGCAGCAGCGCAAAGGGCATATCGGAACGACCTGAAAAAAGCCTGTTCATTGCGGATTCCTGTCCTGGGTTTAGTGCTGTTCGATCAGTTCATCCAGTTTTTTCTGGCTCGCTTGCAGCGTAGT      <  3:80672/150‑1
                                                                                                                                          CAGCAGTAATAAGCTGGGCGCGAGAAGCAGCAGCGCAAAGGGCATATCGGAACGACCTGAAAAAAGCCTGTTCATTGCGGATTCCTGTCCTGGGTTTAGTTCTGTTCGATCCGTTCATCCAGTTTTTTCTGG                       >  2:128932/1‑132
                                                                                                                                           AGCAGTAATAAGCTGGGCGCGAGAAGCAGCAGCGCAAAGGGCATATCGGAACGACCTGAAAAAAGCCTGTTCATTGCGGATTCCTGTCCTGGGTTTAGTGCTGTTCGATCAGTTCATCCAGTTTTTTCTGGCTCGCTTGCAGCGTAGTAG    <  3:818181/150‑1
                                                                                                                                           AGCAGTAATAAGCTGGGCACGAGAAGCAGCAGCGCAAAGGGCATATCGGAACGACCTGAAAAAAGCCTGTTCATTGCGGATTCCTGTCCTGGGTTTAGTGCTGTTCGATCAGTTCATCCAGTTTTTTCTGGCTCGCTTGCAGCGTAGTAG    <  3:358525/150‑1
                                                                                                                                             CAGTAATAAGCTTGGCGCGAGAAGCAGCAGCGCAAAGGGCATATCGGAACGACCTGAAAAAAGCCTGTTCATTGCGGATTCCTGTCCTGGGTTTAGTGCTGTTCGATCAGTTCATCCAGTTTTTTCTGGCTCGCTTGCAGCGTAGTAGAG  <  3:109530/150‑1
                                                                                                                                                                                                                                                                                                   
TCTCTACTACGCTGCAAGCGAGCCAGAAAAAACTGGATGAACTGATCGAACAGCACTAAACCCAGGACAGGAATCCGCAATGAACAGGCTTTTTTCAGGTCGTTCCGATATGCCCTTTGCGCTGCTGCTTCTCGCGCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1373143‑1373284
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccagcAGTAATAAGCTGGGCGCGAGAAGCAGCAGCGCAAAGGGCATATCGGAACGACCTGAAAAAAGCCTGTTCATTGCGGATTCCTGTCCTGGGTTTAGTGCTGTTCGATCAGTTCATCCAGTTTTTTCTGGCTCGCTTGCAGCGTAGTAGAG  <  NC_000913/1373292‑1373144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.